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Report for CCDS51478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51478.1 Public Mus musculus 5 Tada2b 23 108 98 CCDS HistoryNCBI Gene:231151Re-query CCDS DB by CCDS ID:51478.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031097.7 ENSMUSP00000031097.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031097.7Link to Ensembl Protein Viewer:ENSMUSP00000031097.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000031097Re-query CCDS DB by Protein ID:ENSMUSP00000031097
Original member Current member NCBI NM_001170454.1 NP_001163925.1 Accepted alive Link to Nucleotide Sequence:NM_001170454.1Link to Protein Sequence:NP_001163925.1Re-query CCDS DB by Nucleotide ID:NM_001170454Re-query CCDS DB by Protein ID:NP_001163925Link to BLAST:NP_001163925.1

Chromosomal Locations for CCDS 51478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 36475970 36476962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 36483788 36484057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCGGAGCTGGGTAAGAAGTACTGCGTGTACTGCTTGGCCGAGGTGAGCCCGCTGCGCTTCCGCTGCA
CAGAGTGCCAGGACATCGAGCTGTGCCCCGAGTGCTTCTCGGCCGGCGCGGAGATCGGCCACCACCGCCG
CTACCACGGCTACCAGCTGGTAGACGGCGGACGATTCACACTCTGGGGTCCTGAGGCGGAGGGCGGCTGG
ACCAGCCGCGAGGAGCAGCTGCTGCTGGACGCCATCGAGCAGTTCGGCTTCGGCAACTGGGAAGACATGG
CTGCACATGTTGGTGCTTCACGGACTCCCCAGGAAGTGATGGAGCACTACGTTAGCATGTATATCCATGG
GAACTTGGGCAAAGCCTGCATCCCTGACACCATCCCCAACCGGGTGACAGATCACACCTGCCCCAGTGGA
GGCCCTCTCTCGCCTAGCCTTACCACACCTTTACCCCCATTGGACATCTCTGTGGCTGAGCAGCAGCAGC
TGGGCTACATGCCACTGCGAGATGATTATGAGATAGAGTATGACCAGGATGCCGAGACGCTCATCAGTGG
GCTGTCTGTGAACTATGACGATGATGATGTGGAGATAGAGCTCAAGCGTGCCCATGTAGACATGTATGTG
CGGAAGCTGAAGGAGAGGCAGCGCCGGAAGAACATTGCCAGAGACTATAACCTGGTGCCAGCCTTCCTGG
GCAAGGACAAGAAGGAGAAGGAGAAGACATTGAAGAGAAAGATCACCAAGGAGGAGAAAGAGCTGCGGCT
CAAACTACGGCCACTCTACCAGTTCATGTCCTGCAAAGAATTTGATGATTTATTTGAAAATATGCACAAA
GAAAAGATGCTTCGCGCCAAGATTCGAGAGCTGCAGCGCTACCGGCGCAATGGCATTACAAAGATGGAGG
AGTCGGCCGAATATGAGGCCGCCAGACACAAACGGGAGAGGAGGAAGGAGAACAAAAACCTGGCCAGCTC
CAAAAGGGGGAAGGAGGATGGCAAAGACAGCGAGTTTGCAGCCATTGAGAACCTTCCTGGGTTTGAGCTG
CTGTCAGATAGGGAGAAGGTTCTCTGTAGTTCATTGAACTTGAGTCCTGCACGCTATGTGACTGTGAAGA
CTATTATAATTAAAGATCACCTCCAGAAGCGGCAAGGGATCCCCTCTAAAAGCCGCCTTCCCAGTTATCT
GGACAAGGTCCTAAAGAAAAGGATTTTAAATTTCCTCACAGAAAGTGGGTGGATATCCAGGGATGCTTCC
TGA

Translation (420 aa):
MAELGKKYCVYCLAEVSPLRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFTLWGPEAEGGW
TSREEQLLLDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIHGNLGKACIPDTIPNRVTDHTCPSG
GPLSPSLTTPLPPLDISVAEQQQLGYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYV
RKLKERQRRKNIARDYNLVPAFLGKDKKEKEKTLKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHK
EKMLRAKIRELQRYRRNGITKMEESAEYEAARHKRERRKENKNLASSKRGKEDGKDSEFAAIENLPGFEL
LSDREKVLCSSLNLSPARYVTVKTIIIKDHLQKRQGIPSKSRLPSYLDKVLKKRILNFLTESGWISRDAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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