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Report for CCDS18981.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18981.2 Public Mus musculus 4 Dnajc11 23 108 98 CCDS HistoryNCBI Gene:230935Re-query CCDS DB by CCDS ID:18981.2See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 18981.1
The coding region has been updated to extend the C-terminus to one that is more supported by available conservation, transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 18981.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062904.10 ENSMUSP00000051643.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062904.10Link to Ensembl Protein Viewer:ENSMUSP00000051643.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000062904Re-query CCDS DB by Protein ID:ENSMUSP00000051643
Original member Current member NCBI NM_172704.3 NP_766292.2 Accepted alive Link to Nucleotide Sequence:NM_172704.3Link to Protein Sequence:NP_766292.2Re-query CCDS DB by Nucleotide ID:NM_172704Re-query CCDS DB by Protein ID:NP_766292Link to BLAST:NP_766292.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766292.2 559 Q5U458 559 100% 0 0

Chromosomal Locations for CCDS 18981.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151933753 151933824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151950394 151950523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151952842 151952915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151957103 151957204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151968499 151968627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151969846 151969968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151970857 151970930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151973480 151973669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151973760 151973845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151974197 151974313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151976950 151977105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151977999 151978068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151979272 151979329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151979444 151979586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151979918 151980047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151980703 151980728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGGCGACGGCCTTGAGCGAGGAGGAGCTGGACAATGAAGACTATTACTCACTGCTGAACGTGCGCAGGG
AGGCCTCTTCTGAAGAGCTGAAGGCTGCCTACCGGAGGCTGTGTATGCTTTACCATCCGGACAAGCACAG
GGACCCAGAGCTCAAATCCCAGGCGGAGCGGCTGTTTAACCTTGTGCACCAGGCTTATGAAGTGCTTAGT
GATCCCCAAACAAGAGCTATCTATGATATATACGGGAAGAGAGGCCTGGAGATGGAAGGATGGGAGGTGG
TGGAAAGAAAGAGAACCCCAGCCGAGATCAGAGAGGAGTTTGAGAGACTCCAGAGAGAGCGCGAAGAGAG
GAGACTACAACAGCGAACGAACCCCAAGGGAACCATCAGCGTTGGAGTAGATGCGACTGACCTTTTTGAT
CGTTATGATGAGGAATATGAAGATGTGTCCGGAAGTGGCTTCCCGCAGATTGAGATTAATAAAATGCACA
TATCCCAGTCCATTGAGGCGCCCTTGACAGCCACAGACACAGCCATCCTCTCTGGAAGTCTCTCCACCCA
GAATGGCAACGGCGGCGGCTCCGTTAACTTTGCACTCCGACGTGTCACCTCTGCAAAGGGATGGGGAGAG
TTGGAGTTTGGAGCTGGAGACCTCCAGGGGCCTTTATTTGGTCTCAAGCTGTTCCGTAATCTCACCCCAA
GATGCTTTGTGACGACAAACTGTGCTCTGCAGTTTTCATCCCGTGGGATCCGGCCTGGCCTGACCACTGT
GCTAGCTCGGAACCTGGACAAGAACACTGTGGGCTACCTGCAGTGGCGCTGGGGTATCCAGTCAGCCATG
AACACCAGCATCGTCCGGGACACTAAGACCTGCCACTTCACGGTGGCCTTGCAGCTGGGCATCCCTCACT
CCTTTGCACTCATCAGTTATCAGCACAAGTTCCAGGACGACGACCAGACTCGAGTGAAAGGGTCCCTCAA
GGCAGGCTTCTTTGGGACCATAGTGGAGTATGGAGCTGAGAGGAAGATTTCCCGACACAGCGTCTTGGGT
GCGGCTGTGAGCATTGGCGTCCCTCAGGGTGTGTCTCTCAAAGTCAAGCTGAACAGGGCCAGTCAGACCT
ACTTCTTCCCCATCCACCTGACGGATCAGCTGCTCCCCAGCGCTGTGTTCTACGCCACCGTGGGGCCGCT
GGTCGTCTACTTGGCAGTGCACAGGCTGATCATCAGACCGTACCTCAGGGCTCAGAAAGAGAAGGAACTG
GAAAAGCAGAGAGAGAACACAGCCAGCGACATCCTGCAGAAGAAGCAAGAGGCAGAGGCCGCTGTTCGGC
TAATGCAGGAATCTGTCCGAAGAATAATTGAAGCAGAGGAGTCACGAATGGGGCTTATCATCGTGAATGC
CTGGTATGGGAAATTTGTCAATGACAAGAGCAGGAAGAACGAGAAGGTGAAGGTGATTGACGTGACAGTG
CCCCTGCAGTGCCTGGTGAAGGACTCCAAGCTCATCCTCACAGAGGCCTCCAAGGCAGGGCTGCCGGGGT
TCTATGATCCATGTGTCGGGGAGGAGAAGAGCCTGCGAGTGCTGTACCAGTTCCGAGGTGTGCTCCACCA
GGTTATGGTGCCTGACAGTGAGGCCCTGAGGATACCAAAGCAGTCTCACAGAATCGACACAGACGGGTAA

Translation (559 aa):
MATALSEEELDNEDYYSLLNVRREASSEELKAAYRRLCMLYHPDKHRDPELKSQAERLFNLVHQAYEVLS
DPQTRAIYDIYGKRGLEMEGWEVVERKRTPAEIREEFERLQREREERRLQQRTNPKGTISVGVDATDLFD
RYDEEYEDVSGSGFPQIEINKMHISQSIEAPLTATDTAILSGSLSTQNGNGGGSVNFALRRVTSAKGWGE
LEFGAGDLQGPLFGLKLFRNLTPRCFVTTNCALQFSSRGIRPGLTTVLARNLDKNTVGYLQWRWGIQSAM
NTSIVRDTKTCHFTVALQLGIPHSFALISYQHKFQDDDQTRVKGSLKAGFFGTIVEYGAERKISRHSVLG
AAVSIGVPQGVSLKVKLNRASQTYFFPIHLTDQLLPSAVFYATVGPLVVYLAVHRLIIRPYLRAQKEKEL
EKQRENTASDILQKKQEAEAAVRLMQESVRRIIEAEESRMGLIIVNAWYGKFVNDKSRKNEKVKVIDVTV
PLQCLVKDSKLILTEASKAGLPGFYDPCVGEEKSLRVLYQFRGVLHQVMVPDSEALRIPKQSHRIDTDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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