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Report for CCDS38884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38884.1 Public Mus musculus 4 Zfp362 23 108 98 CCDS HistoryNCBI Gene:230761Re-query CCDS DB by CCDS ID:38884.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38884.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071108.13 ENSMUSP00000065733.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071108.13Link to Ensembl Protein Viewer:ENSMUSP00000065733.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000071108Re-query CCDS DB by Protein ID:ENSMUSP00000065733
Original member Current member EBI ENSMUST00000106072.8 ENSMUSP00000101686.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106072.8Link to Ensembl Protein Viewer:ENSMUSP00000101686.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106072Re-query CCDS DB by Protein ID:ENSMUSP00000101686
Original member NCBI NM_001081098.1 NP_001074567.1 Updated not alive Link to Nucleotide Sequence:NM_001081098.1Link to Protein Sequence:NP_001074567.1Re-query CCDS DB by Nucleotide ID:NM_001081098Re-query CCDS DB by Protein ID:NP_001074567
Current member NCBI NM_001081098.2 NP_001074567.1 Accepted alive Link to Nucleotide Sequence:NM_001081098.2Link to Protein Sequence:NP_001074567.1Re-query CCDS DB by Nucleotide ID:NM_001081098Re-query CCDS DB by Protein ID:NP_001074567Link to BLAST:NP_001074567.1

Chromosomal Locations for CCDS 38884.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 128774521 128774637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128777084 128777242 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128777368 128777446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128785970 128786194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128786893 128787220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128789864 128790110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128790250 128790313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 128794851 128794888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1257 nt):
ATGAGTAGAAGCTCACCAAGTGGGAAAGGACCCTCTAGGATGGCCGAACCTCGATTTAACAACCCGTACT
TCTGGCCCCCTCCTCCCACCATGCCGAGCCAGCTGGACAACCTGGTCCTGATTAACAAGATCAAAGAGCA
GCTGATGGCTGAAAAGATCCGGCCACCTCACCTGCCACCCACCTCAGCCTCATCGCAGCAGCCACTGCTA
GTCCCTCCCGCGCCCGCCGAGAGCAGCCAGGCGGTCATGTCGCTGCCCAAGCTGCAGCAGGTGCCCGGGC
TGCACCCGCAGTCCGTGCCGCAGCCCGACGTGGCACTGCACGCGAGGCCGGCCACCAGTACTGTCACAGG
TCTGGGGCTTTCCTCTCGAACCCCTGCTGTGAGTACATCTGAGTCAACCCCAGGGACTGGAACAGGCACC
AGTACCCCGTCCACACCCACCACCACCAGCCAGAGCCGCCTCATCGCCTCATCCCCCACCCTCATCTCAG
GGATCACCAGCCCCCCACTCCTGGACTCCATCAAGACAATCCAGGGCCACGGTCTGCTTGGCCCCCCCAA
GTCTGAACGCGGCCGGAAAAAGATCAAGGCAGAGAACCCAGGGGGTCCCCCTGTCCTTGTTGTCCCGTAC
CCCATCCTGGCCTCCGGTGAGACCGCAAAGGAGGGCAAGACATACAGGTGTAAGGTCTGCCCGCTCACCT
TTTTCACCAAGTCTGAGATGCAGATCCACTCCAAGTCGCACACCGAGGCCAAGCCCCACAAGTGCCCACA
CTGCTCCAAGTCCTTTGCCAACGCCTCCTACCTGGCCCAGCACCTGCGCATCCACCTGGGTGTCAAGCCC
TACCACTGCTCCTACTGTGACAAGTCCTTCCGGCAGCTCTCCCACCTCCAGCAACATACCAGAATCCACA
CAGGCGACAGACCATACAAGTGCCCGCATCCTGGCTGCGAAAAGGCTTTCACTCAGCTCTCCAACCTCCA
GTCTCACCAGCGCCAGCACAATAAGGACAAGCCCTACAAATGTCCCAACTGCTACCGGGCCTACTCAGAC
TCCGCCTCCCTCCAGATCCACCTCTCTGCCCATGCCATCAAGCACGCCAAGGCCTACTGCTGCAGCATGT
GCGGGCGGGCCTACACCTCGGAGACCTACCTGATGAAGCACATGTCCAAACACACAGTGGTGGAACACCT
GGTGAGCCATCACTCACCCCAGAGGACCGAGTCCCCCGGCATCCCGGTGCGAATCTCTCTGATCTGA

Translation (418 aa):
MSRSSPSGKGPSRMAEPRFNNPYFWPPPPTMPSQLDNLVLINKIKEQLMAEKIRPPHLPPTSASSQQPLL
VPPAPAESSQAVMSLPKLQQVPGLHPQSVPQPDVALHARPATSTVTGLGLSSRTPAVSTSESTPGTGTGT
STPSTPTTTSQSRLIASSPTLISGITSPPLLDSIKTIQGHGLLGPPKSERGRKKIKAENPGGPPVLVVPY
PILASGETAKEGKTYRCKVCPLTFFTKSEMQIHSKSHTEAKPHKCPHCSKSFANASYLAQHLRIHLGVKP
YHCSYCDKSFRQLSHLQQHTRIHTGDRPYKCPHPGCEKAFTQLSNLQSHQRQHNKDKPYKCPNCYRAYSD
SASLQIHLSAHAIKHAKAYCCSMCGRAYTSETYLMKHMSKHTVVEHLVSHHSPQRTESPGIPVRISLI


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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