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Report for CCDS18261.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18261.1 Public Mus musculus 4 Tmem268 23 108 98 CCDS HistoryNCBI Gene:230279Re-query CCDS DB by CCDS ID:18261.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18261.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077709.10 ENSMUSP00000076891.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077709.10Link to Ensembl Protein Viewer:ENSMUSP00000076891.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000077709Re-query CCDS DB by Protein ID:ENSMUSP00000076891
Original member Current member EBI ENSMUST00000080336.3 ENSMUSP00000079211.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080336.3Link to Ensembl Protein Viewer:ENSMUSP00000079211.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080336Re-query CCDS DB by Protein ID:ENSMUSP00000079211
Original member Current member NCBI NM_001356354.1 NP_001343283.1 Accepted alive Link to Nucleotide Sequence:NM_001356354.1Link to Protein Sequence:NP_001343283.1Re-query CCDS DB by Nucleotide ID:NM_001356354Re-query CCDS DB by Protein ID:NP_001343283Link to BLAST:NP_001343283.1
Original member Current member NCBI NM_001356355.1 NP_001343284.1 Accepted alive Link to Nucleotide Sequence:NM_001356355.1Link to Protein Sequence:NP_001343284.1Re-query CCDS DB by Nucleotide ID:NM_001356355Re-query CCDS DB by Protein ID:NP_001343284Link to BLAST:NP_001343284.1
Original member Current member NCBI NM_144905.4 NP_659154.2 Accepted alive Link to Nucleotide Sequence:NM_144905.4Link to Protein Sequence:NP_659154.2Re-query CCDS DB by Nucleotide ID:NM_144905Re-query CCDS DB by Protein ID:NP_659154Link to BLAST:NP_659154.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343283.1 342 Q8R239-1 342 100% 0 0
NP_001343284.1 342 Q8R239-1 342 100% 0 0
NP_659154.2 342 Q8R239-1 342 100% 0 0

Chromosomal Locations for CCDS 18261.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 63562523 63562631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63565657 63565766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63568461 63568568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63569944 63570093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63577801 63577911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63579933 63580013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63580293 63580472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 63583786 63583965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGCTTGTGAGCCTCCCACAGATCCTGGTGGGGCAGCTGGTCCCCTGCCCACCTCTACCCTTGGCTGCA
ACATCCTGCCTCAGGGGAACCCTCCTGGCTGGGGGCAAGAGCTACACAATGGCCAGGTCCTCACAGTCCT
CCGGATCGACAATACCTGTGCACCTATCTCCTTTGACCTGGGAGCTGCAGAAGAGCAACTGCAGGCCTGG
GGCATTCAGGTCCCTGCTGAGCAGTACAGGAACTTGGCTGAGAGTGCCCTTTTGGAACCTCAAGTGAGGA
GGTACATCATCTACAACTCCAGGCCCATGAGGCTGGCCTTTGCTGTGGTGTTCTACGTGTTGGTGTGGGC
CAACATCTACTCCACCAGCCAAATGTTTGCCCTGGGCAACCAGTGGGCAGGCGTGCTGCTTGCGACCCTG
GCTGCTTTCAGCCTGACCCTGACCCTTGTGCTGGTCTTTGAGAGGCAGCAGAGGAAGGCCAACACTAACA
CAGACCTGAGGCTGGTGGCCGCCAATGGAGCCCTTCTGCGACACCGTGTGCTGCTGGGGGTGACAGACAC
AGTGGAGGGATGCCAGAGTGTGATCCAGCTCTGGTTTGTCTACTTCGATCTGGAGAACTGTGTGCAGTTT
TTGTCCGACCATGTTCAAGAGATGAAGAGGAGCCAAGAGTCCTTGCTGAGAAGCAGATTGAGCCAGCTGT
GCGTTGTCATGGAGACTGGAGTGAGCCCTGTGGTGGAAGGGCCCGAGGATTTGGAGGATGCTCCCCTCCT
GCCCAGCACTCCTGGTCCTCAGGAGAGGCCACTCACACAGACTGAACTCTATCAGCTTGTTCCAGAGGCT
GAGCCGGAGGAGATGGCCCGGCAGCTACTGGCAGTGTTTGGTGGCTACTACACCCGGCTCCTGGTGACCT
CTCGGCTCCCTCAGTCAATGGGAACGCGACACATGGACTCTGCAAGGATCCCATGCCCCTGCCAGCTCAT
AGAAGTACACGTTCTGGGCACAGGATGTTGCCCGTTCCTGGCTAGGTGA

Translation (342 aa):
MACEPPTDPGGAAGPLPTSTLGCNILPQGNPPGWGQELHNGQVLTVLRIDNTCAPISFDLGAAEEQLQAW
GIQVPAEQYRNLAESALLEPQVRRYIIYNSRPMRLAFAVVFYVLVWANIYSTSQMFALGNQWAGVLLATL
AAFSLTLTLVLVFERQQRKANTNTDLRLVAANGALLRHRVLLGVTDTVEGCQSVIQLWFVYFDLENCVQF
LSDHVQEMKRSQESLLRSRLSQLCVVMETGVSPVVEGPEDLEDAPLLPSTPGPQERPLTQTELYQLVPEA
EPEEMARQLLAVFGGYYTRLLVTSRLPQSMGTRHMDSARIPCPCQLIEVHVLGTGCCPFLAR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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