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Report for CCDS38378.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38378.1 Public Mus musculus 2 Slc17a9 23 108 98 CCDS HistoryNCBI Gene:228993Re-query CCDS DB by CCDS ID:38378.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38378.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094218.3 ENSMUSP00000091771.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094218.3Link to Ensembl Protein Viewer:ENSMUSP00000091771.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000094218Re-query CCDS DB by Protein ID:ENSMUSP00000091771
Original member Current member NCBI NM_183161.3 NP_898984.3 Accepted alive Link to Nucleotide Sequence:NM_183161.3Link to Protein Sequence:NP_898984.3Re-query CCDS DB by Nucleotide ID:NM_183161Re-query CCDS DB by Protein ID:NP_898984Link to BLAST:NP_898984.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_898984.3 447 Q8VCL5 447 100% 0 0

Chromosomal Locations for CCDS 38378.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 180725360 180725451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180731880 180732077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180732433 180732572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180733717 180733816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180735843 180735973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180736687 180736783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180737007 180737103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180737592 180737679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180738409 180738443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180739819 180739934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180740526 180740581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180740713 180740742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 180741283 180741446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1344 nt):
ATGCCATCCCAGCGCTCTAGCCTGATGCAGCCAATCCCAGAGGAGACCCGCAAGACCCCTTCTGCGGCAG
CAGAGGATACACGGTGGTCCAGGCCTGAATGCCAGGCCTGGACAGGAATCCTGCTCCTGGGCACCTGCCT
GCTGTACTGCGCCCGAGTCACCATGCCCGTCTGTACTGTTGCCATGAGCCAGGACTTTGGCTGGAACAAG
AAGGAGGCTGGTATCGTGCTCAGCAGCTTCTTCTGGGGCTACTGCCTGACTCAGGTGGTGGGCGGCCACC
TTGGGGATCGCATCGGAGGAGAGAAGGTCATCTTGCTGTCAGCCTCCGCCTGGGGCTTCATTACTGTCAC
CACACCACTGCTTGCGCACCTCGGCAGCGGCCACCTGGCCTTCCTGACATTCTCTCGAATCCTCACCGGT
CTGCTCCAAGGTGTCTACTTTCCAGCCCTGACCAGTCTGCTGTCCCAGAAAGTACAGGAGAGCGAGAGAG
CCTTTACCTACAGCACTGTGGGTGCTGGCTCCCAGGTCGGGACCCTGGTGACTGGGGGCGTAGGCTCCGT
GCTCCTGGACCAGTGTGGCTGGCAGAGTGTCTTCTACTTCTCAGGTGGCCTCACCTTGCTCTGGGCGTAC
TATGTGTACAGGTACCTGCTGAATGAGAAAGACCTTGTCCTGGCCCTGGGATTCCTTGCTCAAGGCCTAC
CTGTGACCAAGCCCTCCAAAGTGCCCTGGAGACAACTATTCCGGAAGGCCTCTGTCTGGGCGGCAATCTG
CTCCCAGTTGTGCTCTGCTTGCTCCTTCTTCATTCTACTCTCCTGGCTGCCCACCTTCTTCAAGGAGACC
TTCCCCAACTCCAAGGGCTGGGTCTTCAATGTAGTCCCCTGGATGCTGGCAATTCCTGCTAGTCTATTCA
GTGGGTTCATCTCCGACCGCCTTATCAGTCAGGGTTACAGAGTCATCACGGTGCGTAAGTTCATGCAGGT
CATGGGCCTTGGTCTGTCAAGCATTTTTGCCCTGTGTCTGGGTCATACCACAAGCTTCCTCAAGGCTATG
ATCTTTGCATCAGCTTCCATTGGCTTCCAGACCTTCAACCACAGTGGTATTTCAGTCAACATTCAGGACC
TGGCCCCATCCTGTGCTGGCTTCCTGTTTGGTGTAGCCAACACTGCAGGGGCCTTAGCAGGTGTGGTAGG
CGTGTGTCTGAGTGGCTACCTGATCGAGACCACTGGTTCCTGGACCTGTGTGTTCCACCTGGTAGCCATC
ATCAGCAACCTGGGGCTGGGCACCTTCCTGGTGTTCGGGAAGGCGCAGAGGGTGGACCTGGTCCCCACTC
ATGAGGACCTCTAA

Translation (447 aa):
MPSQRSSLMQPIPEETRKTPSAAAEDTRWSRPECQAWTGILLLGTCLLYCARVTMPVCTVAMSQDFGWNK
KEAGIVLSSFFWGYCLTQVVGGHLGDRIGGEKVILLSASAWGFITVTTPLLAHLGSGHLAFLTFSRILTG
LLQGVYFPALTSLLSQKVQESERAFTYSTVGAGSQVGTLVTGGVGSVLLDQCGWQSVFYFSGGLTLLWAY
YVYRYLLNEKDLVLALGFLAQGLPVTKPSKVPWRQLFRKASVWAAICSQLCSACSFFILLSWLPTFFKET
FPNSKGWVFNVVPWMLAIPASLFSGFISDRLISQGYRVITVRKFMQVMGLGLSSIFALCLGHTTSFLKAM
IFASASIGFQTFNHSGISVNIQDLAPSCAGFLFGVANTAGALAGVVGVCLSGYLIETTGSWTCVFHLVAI
ISNLGLGTFLVFGKAQRVDLVPTHEDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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