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Report for CCDS50791.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50791.1 Public Mus musculus 2 Gdap1l1 23 108 98 CCDS HistoryNCBI Gene:228858Re-query CCDS DB by CCDS ID:50791.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50791.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000018087.12 ENSMUSP00000018087.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000018087.12Link to Ensembl Protein Viewer:ENSMUSP00000018087.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000018087Re-query CCDS DB by Protein ID:ENSMUSP00000018087
Original member Current member EBI ENSMUST00000109420.9 ENSMUSP00000105047.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109420.9Link to Ensembl Protein Viewer:ENSMUSP00000105047.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109420Re-query CCDS DB by Protein ID:ENSMUSP00000105047
Original member NCBI NM_144891.2 NP_659140.2 Updated not alive Link to Nucleotide Sequence:NM_144891.2Link to Protein Sequence:NP_659140.2Re-query CCDS DB by Nucleotide ID:NM_144891Re-query CCDS DB by Protein ID:NP_659140
Current member NCBI NM_144891.3 NP_659140.2 Accepted alive Link to Nucleotide Sequence:NM_144891.3Link to Protein Sequence:NP_659140.2Re-query CCDS DB by Nucleotide ID:NM_144891Re-query CCDS DB by Protein ID:NP_659140Link to BLAST:NP_659140.2

Chromosomal Locations for CCDS 50791.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163438546 163438725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163446034 163446226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163447499 163447672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163450566 163450663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163451501 163451615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163453584 163453927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1104 nt):
ATGGCGACCCCCAACAACCTGACCCCCACCAACTGCAGCTGGTGGCCCATCTCGGCACTGGAGAGCGATG
CAGCCAAGCCGGTGGAGACCCCCGACGCGCCCGAGGCATCCAGCCCCGCCCATTGGCCCAAGGAGAGCCT
GGTTCTGTACCACTGGACCCAGTCCTTCAGCTCGCAGAAGGTGCGGCTGGTGATCGCTGAGAAGGGCCTG
GCCTGTGAAGAGAGAGATGTGAGCCTGCCTCAGAGCGAGCATAAGGAACCGTGGTTCATGCGGCTCAACC
TGGGTGAGGAGGTCCCAGTCATTATCCACAGAGACAACATTATCAGTGACTATGACCAGATCATTGACTA
CGTGGAACGCACCTTCACGGGAGAGCATGTGGTGGCCTTGATGCCCGAGGCGGGCAGCCCACAACACGCC
CGAGTGCTGCAGTACCGGGAGCTGCTGGATGCGCTGCCCATGGACGCCTACACACACGGCTGCATCCTGC
ACCCTGAGCTCACCACAGATTCCATGATCCCCAAGTATGCCACGGCTGAGATCCGCAGACATTTAGCCAA
CGCCACCACAGACCTCATGAAACTGGACCACGAGGAGGAACCACAGCTCTCTGAGCCCTACCTTTCTAAA
CAAAAGAAGCTTATGGCCAAGATCCTGGAGCACGATGACGTGAGCTACCTGAAGAAGATCCTCGGGGAGC
TGGCTATGGTGCTGGACCAGATTGAGGCGGAGCTGGAGAAGAGGAAACTGGAGAATGAGGGGCAGACGTG
CGAGCTGTGGCTCTGTGGCTGTGCCTTCACCCTGGCGGATGTCCTCCTGGGAGCCACCCTGCACCGCCTC
AAGTTCCTGGGACTGTCCAAGAAATACTGGGAAGACGGCAGCCGGCCCAACCTGCAGTCCTTCTTTGAGA
GGGTCCAGAGACGCTTTGCCTTCCGGAAAGTCCTGGGCGACATCCACACCACTCTGCTGTCAGCTGTTAT
CCCCAACGCGTTCCGACTGGTCAAACGGAAACCGCCATCCTTCTTTGGGGCATCCTTCCTCATGGGCTCC
TTGGGTGGGATGGGCTACTTTGCCTACTGGTACCTCAAGAAAAAATACATCTAG

Translation (367 aa):
MATPNNLTPTNCSWWPISALESDAAKPVETPDAPEASSPAHWPKESLVLYHWTQSFSSQKVRLVIAEKGL
ACEERDVSLPQSEHKEPWFMRLNLGEEVPVIIHRDNIISDYDQIIDYVERTFTGEHVVALMPEAGSPQHA
RVLQYRELLDALPMDAYTHGCILHPELTTDSMIPKYATAEIRRHLANATTDLMKLDHEEEPQLSEPYLSK
QKKLMAKILEHDDVSYLKKILGELAMVLDQIEAELEKRKLENEGQTCELWLCGCAFTLADVLLGATLHRL
KFLGLSKKYWEDGSRPNLQSFFERVQRRFAFRKVLGDIHTTLLSAVIPNAFRLVKRKPPSFFGASFLMGS
LGGMGYFAYWYLKKKYI


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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