NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16507.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16507.1 Public Mus musculus 2 Kif18a 23 108 98 CCDS HistoryNCBI Gene:228421Re-query CCDS DB by CCDS ID:16507.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16507.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028527.7 ENSMUSP00000028527.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028527.7Link to Ensembl Protein Viewer:ENSMUSP00000028527.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000028527Re-query CCDS DB by Protein ID:ENSMUSP00000028527
Original member NCBI NM_139303.1 NP_647464.1 Updated not alive Link to Nucleotide Sequence:NM_139303.1Link to Protein Sequence:NP_647464.1Re-query CCDS DB by Nucleotide ID:NM_139303Re-query CCDS DB by Protein ID:NP_647464
Current member NCBI NM_139303.2 NP_647464.1 Accepted alive Link to Nucleotide Sequence:NM_139303.2Link to Protein Sequence:NP_647464.1Re-query CCDS DB by Nucleotide ID:NM_139303Re-query CCDS DB by Protein ID:NP_647464Link to BLAST:NP_647464.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647464.1 886 Q91WD7 886 100% 0 0

Chromosomal Locations for CCDS 16507.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 109287842 109288166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109289679 109289836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109292065 109292169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109292971 109293081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109294939 109295136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109296620 109296796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109298075 109298149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109298337 109298449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109302803 109302965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109306850 109307014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109310547 109310668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109317875 109318110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109333256 109333667 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109334321 109334428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109338567 109338676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 109341158 109341240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2661 nt):
ATGTCTGGCACTGAAGAAGACTTATGTCACCGCATGAAAGTAGTTGTCCGTGTACGTCCTGAGAACACAA
AAGAAAAGGCGGTGCAGTTCTGTAAAGTGGTTCATGTAGTGGATAAACATATACTCAGTTTTGATCCGAA
ACAAGAAGAAATCAGTTTTTTTCACAGAAAGAAAACTACAAATTTTGATATTACTAAAAGGCAAAATAAA
GATCTGAAGTTTGTATTTGATGCTGTCTTTGATGAAACTTCAACTCAAATGGAAGTTTTTGAACACACAA
CCAAGCCAATCCTTCATAGTTTTCTGAATGGATACAATTGCACAGTATTTGCATATGGTGCCACTGGATC
TGGGAAAACTCACACAATGCTAGGATCAGCTGCTGAACCTGGGGTCATGTACCTGACAATGCTGGACCTT
TTCAAATGCATCGATGAGATTAAAGAAGAGAAAGAGTGTAGCACTGCCGTGTCATACCTGGAGGTATATA
ATGAACAGATCCGTGACCTCTTGACAAACTCAGGACCACTTGCTGTCCGGGAAGATTCCCAAAAAGGAGT
GGTTGTTCAGGGTCTTACTCTACACCAGCCTAAATCTTCAGAGGAAATATTACAGCTACTAGACAATGGA
AACAAAAACAGGACCCAGCATCCCACTGACGTGAATGCAGTGTCTTCTCGTTCCCATGCTGTTTTCCAGA
TTTATTTGCGACAACAAGACAAAACAGCGAGCATCAATCAAAATGTCCGTATAGCCAAAATGTCACTCAT
CGACCTCGCAGGATCTGAGAGGGCCAGTGTTTCGGGTGCTAAAGGGTCACGATTTGTAGAAGGCACAAAT
ATTAACAAATCTCTTTTAGCTCTTGGGAATGTCATCAATGCCTTAGCAAATACAAAGAGAAGAAATCAGC
ATATTCCTTACAGAAATAGTAAGCTTACTCGTTTGCTGAAGGATTCTCTTGGAGGAAACTGTCAAACTAT
AATGATAGCTGCTGTTAGTCCTTCCTCTTTATTTTATGATGACACATATAACACTCTTAAGTATGCTAAT
CGTGCAAAGGAAATTAAATCTTCTTTGAAGAGCAATGTTCTTAATCTCAACAGTCACATATCTCAGTATG
TAAAGATATGTAATATGCAGAAAGCAGAGATTTTAATGTTGAAAGAAAAACTAAAGGCCTATGAAGAACA
GAAAGCCCTGTCTGACAGAAATGACTGTGCTAAATTAGTACATTCAAACCCAGAAGACAGAGAAACTGAA
AGATTTCAAGAAATTCTGAACTGCTTGTTCCAGAATCGAGAAGGAATCAGGCAAGAGTATCTGAAGTTAG
AAATGTTACTTAAGGCAAATGCGCTAAAGTCATCCTATCACCAACAGTGCCATAAACAGATAGAGATGAT
GTGTTCTGAAGACAAAGTGGAAAAGGCCACTTGCAAACGAGATCACAGACTTGAAAAGTTGAAAACCAAC
AGCTGTTTTCTAGAGAAAAAGAAAGAAGAGGTGTCGAAACAATTTGATGAAAATACTAATTGGCTACATC
GTGTTGAAAACGAAATGCGACTCTTGGGTCAAAATGGTGATATTCCAGAGGCACTCAATAAAGAGCTTCA
CTGTCACCATTTACACCTCCAGAACAAAGAACTGAAAACACAAATGGCACACATGACAGCTCTAGCTTGT
CTCCAGGAACAGCAGCACAAGCAAACTGAGGCAGTATTGAATGCTTTGCTTCCAGTACTAAGAAAACAGT
ATTGGAAATTGAAAGAAACTGGCCTGTCAAATGCTGCTTTTGATTCTGACTTCAAAGATATTGAACATTT
AGTAGAGAGAAAAAAGGTGGTGGCTTGGGCTGACCAAACTAATGAACATTCAAACCGAAATGATCTTCCA
GGGATTTCTCTTCTTATGACCTTCCCACAGCTTGAACCAATTCAGTCTATTTCTTGTTGCACATCTGTGA
GTGATCCTAACGTGCTTAAACTTACTCCACAACGAAGAACCAGAAGAAAAATAATTCCTTCTCCCTTGAA
AGTACAACATACTCAGAAGTCTGCACTGTCTGAAAGTACACAGCTCAATGATTCTTTCAGCAAAGAACTT
CAGCCTATTGTTTATACGCCAGAGGACTGCAAAAAAGCTCAAGACCTGTTTCCATCCTTAACGAGAACTT
CATCGCAGTCTGCAAATGTAATGAATGACAATTCCCAGAAAGCACTGTGTAGAATAGAGTCTCCTCTCAG
CAGAACTGAGTGCAAACAGGGTTTGTACTCTACATCTACTCTGTGTGATAGCATCAGAGGCTTGAAGAAT
AAATGGCCTGAACAAGAACCACTAGCAAGCAGCAAAAGCAGTGTGCACAGGATAGAGTCTTCTTCATTTT
CAACAAAGGATTCTATGCCTGAATCAGCAGGTGTGCCGTCCTACATGGCAATGACTACTGCTGCAAAGAG
GAAATGGAAACAAATGAGTTCTACATCAAATGCTTCAATCAAATCTGATGAAAGTTGTGGATTTGCCAAA
CGCATTCGACGGGATAATTCAAGCGTTAAGCCTATGCAAGAAAACAGACTGAAAGTGGGCTATAAAAGAA
ATACCAACAAAACAAATTCAAACATGCTTAGAAAATTTAGAAGAAACACTTCAAAAGAAAATGTACAATA
A

Translation (886 aa):
MSGTEEDLCHRMKVVVRVRPENTKEKAVQFCKVVHVVDKHILSFDPKQEEISFFHRKKTTNFDITKRQNK
DLKFVFDAVFDETSTQMEVFEHTTKPILHSFLNGYNCTVFAYGATGSGKTHTMLGSAAEPGVMYLTMLDL
FKCIDEIKEEKECSTAVSYLEVYNEQIRDLLTNSGPLAVREDSQKGVVVQGLTLHQPKSSEEILQLLDNG
NKNRTQHPTDVNAVSSRSHAVFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASVSGAKGSRFVEGTN
INKSLLALGNVINALANTKRRNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSLFYDDTYNTLKYAN
RAKEIKSSLKSNVLNLNSHISQYVKICNMQKAEILMLKEKLKAYEEQKALSDRNDCAKLVHSNPEDRETE
RFQEILNCLFQNREGIRQEYLKLEMLLKANALKSSYHQQCHKQIEMMCSEDKVEKATCKRDHRLEKLKTN
SCFLEKKKEEVSKQFDENTNWLHRVENEMRLLGQNGDIPEALNKELHCHHLHLQNKELKTQMAHMTALAC
LQEQQHKQTEAVLNALLPVLRKQYWKLKETGLSNAAFDSDFKDIEHLVERKKVVAWADQTNEHSNRNDLP
GISLLMTFPQLEPIQSISCCTSVSDPNVLKLTPQRRTRRKIIPSPLKVQHTQKSALSESTQLNDSFSKEL
QPIVYTPEDCKKAQDLFPSLTRTSSQSANVMNDNSQKALCRIESPLSRTECKQGLYSTSTLCDSIRGLKN
KWPEQEPLASSKSSVHRIESSSFSTKDSMPESAGVPSYMAMTTAAKRKWKQMSSTSNASIKSDESCGFAK
RIRRDNSSVKPMQENRLKVGYKRNTNKTNSNMLRKFRRNTSKENVQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH