NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS19749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19749.1 Public Mus musculus 5 Zp3 23 108 98 CCDS HistoryNCBI Gene:22788Re-query CCDS DB by CCDS ID:19749.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19749.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005073.12 ENSMUSP00000005073.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005073.12Link to Ensembl Protein Viewer:ENSMUSP00000005073.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000005073Re-query CCDS DB by Protein ID:ENSMUSP00000005073
Original member Current member NCBI NM_011776.1 NP_035906.1 Accepted alive Link to Nucleotide Sequence:NM_011776.1Link to Protein Sequence:NP_035906.1Re-query CCDS DB by Nucleotide ID:NM_011776Re-query CCDS DB by Protein ID:NP_035906Link to BLAST:NP_035906.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035906.1 424 P10761 424 100% 0 0

Chromosomal Locations for CCDS 19749.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135980134 135980442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135982639 135982757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135984162 135984265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135984348 135984531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135985545 135985662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135987255 135987346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135987472 135987608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135988400 135988611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1275 nt):
ATGGCGTCAAGCTATTTCCTCTTCCTTTGTCTCCTGCTGTGTGGAGGCCCCGAGCTGTGCAATTCCCAGA
CTCTGTGGCTTTTGCCGGGTGGAACTCCCACCCCAGTGGGGTCCTCATCACCTGTGAAGGTGGAGTGTCT
GGAAGCTGAACTAGTGGTGACTGTCAGTAGAGACCTTTTTGGCACGGGGAAGCTGGTGCAGCCCGGGGAC
CTCACCCTTGGCTCAGAGGGTTGTCAGCCCCGGGTGTCCGTGGATACCGACGTGGTCAGGTTCAACGCCC
AGTTGCACGAGTGCAGCAGCAGGGTGCAGATGACGAAAGATGCCCTGGTGTACAGCACCTTCCTACTCCA
CGACCCTCGCCCTGTGAGTGGCCTGTCCATCCTCAGGACTAACCGTGTGGAGGTACCCATTGAGTGCCGA
TACCCCAGGCAGGGCAATGTGAGCAGCCACCCTATCCAGCCCACCTGGGTTCCCTTCAGAGCCACTGTGT
CCTCAGAGGAGAAACTGGCTTTCTCTCTTCGCCTGATGGAGGAGAACTGGAATACTGAGAAATCGGCTCC
CACCTTCCACCTGGGAGAGGTAGCCCACCTCCAGGCAGAAGTCCAGACTGGAAGCCACCTGCCGCTGCAG
CTGTTTGTGGACCACTGCGTGGCCACGCCTTCACCTTTGCCAGACCCGAACTCCTCCCCCTATCACTTCA
TCGTGGACTTCCACGGTTGCCTTGTGGATGGTCTATCTGAGAGCTTTTCGGCATTTCAAGTCCCCAGACC
CCGGCCAGAGACTCTCCAGTTCACGGTGGATGTATTCCATTTTGCCAACAGCTCCAGAAATACGCTCTAC
ATCACCTGCCATCTCAAAGTCGCGCCAGCTAACCAGATCCCCGATAAGCTCAACAAAGCCTGTTCGTTCA
ACAAGACTTCCCAGAGTTGGTTGCCAGTAGAGGGTGATGCTGACATCTGTGATTGCTGCAGCCATGGCAA
CTGTAGTAATTCAAGCTCTTCACAGTTCCAGATCCATGGACCCCGCCAGTGGTCCAAGCTAGTTTCTCGA
AACCGCAGGCACGTGACCGATGAAGCTGATGTCACTGTAGGGCCCCTGATATTCCTTGGAAAGGCCAACG
ACCAGACTGTGGAAGGCTGGACTGCTTCTGCTCAAACCTCTGTGGCTCTTGGGTTAGGCCTGGCCACAGT
GGCATTCCTGACCCTGGCAGCTATAGTCCTTGCTGTCACCAGGAAGTGTCACTCCTCTTCCTACCTTGTA
TCCCTTCCGCAATAA

Translation (424 aa):
MASSYFLFLCLLLCGGPELCNSQTLWLLPGGTPTPVGSSSPVKVECLEAELVVTVSRDLFGTGKLVQPGD
LTLGSEGCQPRVSVDTDVVRFNAQLHECSSRVQMTKDALVYSTFLLHDPRPVSGLSILRTNRVEVPIECR
YPRQGNVSSHPIQPTWVPFRATVSSEEKLAFSLRLMEENWNTEKSAPTFHLGEVAHLQAEVQTGSHLPLQ
LFVDHCVATPSPLPDPNSSPYHFIVDFHGCLVDGLSESFSAFQVPRPRPETLQFTVDVFHFANSSRNTLY
ITCHLKVAPANQIPDKLNKACSFNKTSQSWLPVEGDADICDCCSHGNCSNSSSSQFQIHGPRQWSKLVSR
NRRHVTDEADVTVGPLIFLGKANDQTVEGWTASAQTSVALGLGLATVAFLTLAAIVLAVTRKCHSSSYLV
SLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH