NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37462.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37462.1 Public Mus musculus 17 Zfp54 23 108 98 CCDS HistoryNCBI Gene:22712Re-query CCDS DB by CCDS ID:37462.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37462.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000007884.14 ENSMUSP00000007884.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000007884.14Link to Ensembl Protein Viewer:ENSMUSP00000007884.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000007884Re-query CCDS DB by Protein ID:ENSMUSP00000007884
Original member Current member EBI ENSMUST00000165230.7 ENSMUSP00000132983.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165230.7Link to Ensembl Protein Viewer:ENSMUSP00000132983.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165230Re-query CCDS DB by Protein ID:ENSMUSP00000132983
Original member Current member NCBI NM_011760.2 NP_035890.2 Accepted alive Link to Nucleotide Sequence:NM_011760.2Link to Protein Sequence:NP_035890.2Re-query CCDS DB by Nucleotide ID:NM_011760Re-query CCDS DB by Protein ID:NP_035890Link to BLAST:NP_035890.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035890.2 585 E9PW05 585 100% 0 0

Chromosomal Locations for CCDS 37462.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 21427799 21427828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21430195 21430321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 21433403 21435003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1758 nt):
ATGGCTGATTCTTCAGTCAACTTGTCCCAGGGTCTGTTGACATTCCGGGATGTGACTGTGGACTTCTCCC
AGGAGGAGTGGGAATGCCTGGACTCTGCTCAGAGGGCTCTGTACATTGAAGTGATGTTGGAGAATTACAG
CAACCTGGTATATGTCGAGAACTACTGCATATGTGATACAGTCTGTCAACATGTGAAGACTGAAAAGGAG
TCTTGTAATGAGCTTGGTGAAATGCTTCATGAACCCTCCAACTGTGCCCTTTATAATAGAAGCGACACTA
CAGAAGCCTCTAACAACTACAGATGCTGTAAGGACCAGGATGCCTCTCTTGACTCATCAAACCCAGATAG
ACTTAAAAGCACGCACACTGGAAAAGAACGTTGTGAATCTAAAGACTGTGCGAAATCTTCCAGTTTGTGT
TCCAGCATTGCTCAAGATCAGAGAACAAACAGTACAAACAAAGAACAGAGACAGGAAAAATATGATGACC
ATTTCATCTCTACACACAGTCTCATGCAACAAGCAATCTATATTGGAGAGAATCCACACCAGTGTATGAA
ATATGGGAAATGTTTCAGTAGTGCCTCAAGCCTCGGGGTACAGCAGAGAACTGATACTGGAAACAAACCC
TACAAGTGCAATATTTGTGACAAATCCTTTACTGAGTGCTCAAGTCTTAAAGAACATCGAAAAACACATC
AAAGACTTCGTGCTGGAACAAACCCTTACAAATGCAATGACTGTGGAAAGTCATTTTCATATTTGTCTGC
ACTTCAAAGTCATCATAAAAGGCATACTGGAGAGAAGAGGTACAAATGTAAAGAATGTGGCAAATCCTAT
GCCTACCGTACTGGTCTGAAGAGACATCAGAAAATCCATACTGCAGAGGAATGTTATAGTTGTCAATACT
GTGGCAAGGTCTTTCATCAGCTTTCACACTTTAAAAGTCATTTCACACTCCATACTGGAGAGAAGCCTTA
CAAATGCAATGAGTGTCACAGATCTTTTCCCCACTATGTATTCTTTAGAAGGCATAAGAAAAATCATTCT
CTACAGAAATCACACAAATGCAAAGAGTGTGGTAAGTCCTTTTTTATATTATCACATCTTAAAACTCATT
ACAGAATCCATACTGGTGAGAAGCCTTACAAATGTACAAAATGTGACAAACTCTTTACACAGTACTCACA
TCTTCGAAGACATCAAAGAATTTATACTGGAAAGAAACTTTATAGATGTGAGGTATGTGACAAATGGTTT
ACTCTGTCCTCAAGTCTCAGCAGACATCAGAAAATCCATACTGAAGCAAAAACTTACAAATGCAAGGACT
GTGACATATTCTTTAACCACTACTCAAGTCTTAGAAGACATCAGAAGGTTCATACTGGAGAAAGACATTA
TACGTGTAAACAGTGTGGCAAGTCTTTTACTAGGGGCTCAACTCTTAGAGTACATCAGAGAATTCATACT
GGAGAAAAACCTTACAAATGTAGTGAATGTGACAAATCATTTACCCAGGCCTCACAACTTAGAACACATC
AGAGAGTTCATACTGGAGAGAAACCTTATGTATGTAAGGAATGTGGCAAATCACTTACTACATGTGCAAT
TCTTAGAGCACATCAGAAAATTCATACTGGAGAAAAACCTTACAAATGTATGGAATGTGACAGATCCTAT
ATCCAATACTCACATCTTAAAAGACATCAGAAAGTTCATACTGGAGAGAAACATAAAATTGTAAATAATG
TGACATAG

Translation (585 aa):
MADSSVNLSQGLLTFRDVTVDFSQEEWECLDSAQRALYIEVMLENYSNLVYVENYCICDTVCQHVKTEKE
SCNELGEMLHEPSNCALYNRSDTTEASNNYRCCKDQDASLDSSNPDRLKSTHTGKERCESKDCAKSSSLC
SSIAQDQRTNSTNKEQRQEKYDDHFISTHSLMQQAIYIGENPHQCMKYGKCFSSASSLGVQQRTDTGNKP
YKCNICDKSFTECSSLKEHRKTHQRLRAGTNPYKCNDCGKSFSYLSALQSHHKRHTGEKRYKCKECGKSY
AYRTGLKRHQKIHTAEECYSCQYCGKVFHQLSHFKSHFTLHTGEKPYKCNECHRSFPHYVFFRRHKKNHS
LQKSHKCKECGKSFFILSHLKTHYRIHTGEKPYKCTKCDKLFTQYSHLRRHQRIYTGKKLYRCEVCDKWF
TLSSSLSRHQKIHTEAKTYKCKDCDIFFNHYSSLRRHQKVHTGERHYTCKQCGKSFTRGSTLRVHQRIHT
GEKPYKCSECDKSFTQASQLRTHQRVHTGEKPYVCKECGKSLTTCAILRAHQKIHTGEKPYKCMECDRSY
IQYSHLKRHQKVHTGEKHKIVNNVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH