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Report for CCDS14887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14887.1 Public Mus musculus 1 Actr1b 23 108 98 CCDS HistoryNCBI Gene:226977Re-query CCDS DB by CCDS ID:14887.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043951.9 ENSMUSP00000047326.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043951.9Link to Ensembl Protein Viewer:ENSMUSP00000047326.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000043951Re-query CCDS DB by Protein ID:ENSMUSP00000047326
Original member NCBI NM_146107.2 NP_666219.1 Updated not alive Link to Nucleotide Sequence:NM_146107.2Link to Protein Sequence:NP_666219.1Re-query CCDS DB by Nucleotide ID:NM_146107Re-query CCDS DB by Protein ID:NP_666219
Current member NCBI NM_146107.3 NP_666219.1 Accepted alive Link to Nucleotide Sequence:NM_146107.3Link to Protein Sequence:NP_666219.1Re-query CCDS DB by Nucleotide ID:NM_146107Re-query CCDS DB by Protein ID:NP_666219Link to BLAST:NP_666219.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666219.1 376 Q8R5C5 376 100% 0 0

Chromosomal Locations for CCDS 14887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 36700076 36700178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36700337 36700377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36700536 36700597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36701134 36701308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36701421 36701513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36701685 36701901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36702059 36702183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36702475 36702600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36706870 36706945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36708191 36708255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 36709806 36709853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGGAGTCCTACGACATCATCGCTAACCAGCCCGTGGTCATCGACAATGGTTCAGGGGTGATCAAGGCTG
GCTTTGCAGGAGACCAGATTCCTAAGTACTGTTTCCCAAACTATGTCGGACGGCCAAAGCACATGCGGGT
TATGGCTGGAGCCCTGGAGGGGGACCTGTTCATTGGACCGAAAGCAGAGGAGCACCGGGGGCTGCTGACC
ATCCGATACCCCATGGAACACGGTGTGGTACGGGATTGGAATGACATGGAACGCATCTGGCAGTACGTCT
ACTCTAAGGACCAGCTGCAGACCTTCTCTGAGGAGCATCCTGTTCTTCTAACGGAGGCCCCACTGAACCC
CAGTAAGAACCGGGAGAAGGCGGCAGAGGTCTTCTTTGAAACCTTCAATGTTCCTGCACTGTTTATCTCC
ATGCAGGCCGTGCTTAGCCTGTACGCAACAGGACGCACCACAGGAGTGGTTTTAGATTCGGGGGACGGGG
TCACTCACGCTGTCCCCATCTATGAGGGCTTTGCCATGCCACACTCCATCATGCGGGTTGACATTGCGGG
CCGGGACGTCTCTCGATATCTGAGGCTGCTGCTACGCAAGGAAGGGGCAGACTTCCACACCTCAGCTGAG
TTTGAGGTGGTCCGGACCATCAAAGAGCGAGCTTGCTATCTGTCCATCAACCCACAAAAGGACGAGGCTC
TCGAGACTGAGAAGGTGCAGTACACCCTTCCAGACGGCAGCACGCTTGATGTGGGGCCTGCGCGCTTCCG
AGCCCCTGAACTGCTGTTCCAGCCAGACCTGGTAGGGGATGAGAGTGAGGGACTCCATGAAGTTCTGGCC
TTCGCCATCCACAAGTCTGACATGGACCTCCGCCGGACACTCTTCTCCAATATCGTGCTGTCAGGGGGCT
CAACACTCTTCAAAGGCTTTGGAGACAGGTTACTAAGTGAAGTAAAGAAGCTTGCCCCGAAGGATGTTAA
AATCAAGATCTCTGCTCCTCAGGAACGGCTGTACTCCACGTGGATTGGAGGCTCCATCCTCGCCTCACTG
GATACCTTCAAGAAGATGTGGGTATCCAAAAAGGAATATGAAGAAGATGGCTCCCGCGCGATTCATCGCA
AAACCTTCTAA

Translation (376 aa):
MESYDIIANQPVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALEGDLFIGPKAEEHRGLLT
IRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFIS
MQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGADFHTSAE
FEVVRTIKERACYLSINPQKDEALETEKVQYTLPDGSTLDVGPARFRAPELLFQPDLVGDESEGLHEVLA
FAIHKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASL
DTFKKMWVSKKEYEEDGSRAIHRKTF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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