NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23144.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23144.1 Public Mus musculus 9 Zpr1 23 108 98 CCDS HistoryNCBI Gene:22687Re-query CCDS DB by CCDS ID:23144.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23144.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000156440.7 ENSMUSP00000117725.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000156440.7Link to Ensembl Protein Viewer:ENSMUSP00000117725.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000156440Re-query CCDS DB by Protein ID:ENSMUSP00000117725
Original member Current member NCBI NM_011752.2 NP_035882.1 Accepted alive Link to Nucleotide Sequence:NM_011752.2Link to Protein Sequence:NP_035882.1Re-query CCDS DB by Nucleotide ID:NM_011752Re-query CCDS DB by Protein ID:NP_035882Link to BLAST:NP_035882.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035882.1 459 Q62384 459 100% 0 0

Chromosomal Locations for CCDS 23144.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 46273197 46273367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46273478 46273639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46274056 46274146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46274657 46274727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46275364 46275450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46275731 46275853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46276200 46276247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46276412 46276478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46276792 46276862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46277646 46277735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46278304 46278414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46279669 46279755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46279916 46279981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 46281038 46281172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGTCTGCCAGCGGGGCTGTGCAGCCGGGACACCCGGGGGCCGCCGTCGGGCCCTCGCCCGCTGCGGCTG
CGTCACCAGCCACCGGGCCTTTGTTCCGGCCCCTCAGCGCCGAGGATGAGGAGCAACAGCCCACCGAGAT
CGAGTCACTGTGCATGAACTGTTACCGGAACGGCACGACGCGACTTCTGCTCACCAAGATCCCCTTCTTT
AGAGAAATCATCGTGAGCTCCTTTTCCTGCGAACACTGTGGCTGGAACAACACGGAGATCCAGTCTGCAG
GCAGGATCCAGGACCAGGGAGTGCGCTACACCTTGACCGTGAGAAGCCAAGAGGACATGAACAGAGAAGT
GGTAAAGACAGACTCTGCCACCACAAGGATCCCCGAGCTGGATTTTGAGATTCCAGCCTTCAGCCAGAAG
GGAGCTCTGACCACTGTTGAAGGACTCATCAGCCGTGCGATCTCTGGCCTGGAACAGGATCAGCCCACAC
GACGGGCAGTGGAAGGTGCCATCGCAGAGAGAATTGATGAGTTCATTGGCAAACTGAAGGACCTAAAGCA
AATGGCTTCCCCTTTCACACTGGTCATTGATGATCCCTCGGGAAACAGCTTTGTAGAAAACCCACATGCT
CCCCAGAAAGATAATGCCTTGGTGATCACATACTATGACCGAACCCCACAGCAAGCTGAGATGCTGGGGC
TCCAAGCAGAAGCACCAGAGGAGAAGGCGGAAGAGGAAGACCTTAGAAACGAAGTGCTCCAGTTCAACAC
TAACTGCCCAGAGTGCAACGCTCCGGCTCAGACCAACATGAAGCTTGTCCAAATCCCCCACTTTAAAGAG
GTTATCATCATGGCCACCAACTGTGAGAATTGTGGGCATCGGACTAATGAGGTGAAGTCCGGAGGAGCTG
TAGAACCTTTGGGTACCAGGATCACCCTCCACATCACAGATCCCTCAGACATGACCAGAGACCTCCTCAA
GTCTGAGACCTGTAGTGTGGAAATCCCAGAGCTTGAGTTTGAACTGGGAATGGCTGTACTTGGGGGCAAG
TTCACCACTCTAGAAGGACTGCTGAAAGACATCCGAGAACTGGTAACCAAGAACCCATTCACACTGGGCG
ACAGCTCTAATCCTGACCAGTCAGAGAAACTGCAGGAGTTTAGCCAGAAGTTGGGCCAGATCATCGAGGG
CAAGATGAAGGCCCACTTTATCATGAATGATCCAGCAGGAAACAGTTATCTGCAGAATGTGTATGCACCT
GAAGACGATCCAGAGATGAAGGTCGAGCGGTACAAACGCACCTTTGACCAAAATGAGGAGCTCGGGCTCA
ATGACATGAAGACAGAGGGCTATGAGGCGGGCCTGGCCCCACAGCGGTAG

Translation (459 aa):
MSASGAVQPGHPGAAVGPSPAAAASPATGPLFRPLSAEDEEQQPTEIESLCMNCYRNGTTRLLLTKIPFF
REIIVSSFSCEHCGWNNTEIQSAGRIQDQGVRYTLTVRSQEDMNREVVKTDSATTRIPELDFEIPAFSQK
GALTTVEGLISRAISGLEQDQPTRRAVEGAIAERIDEFIGKLKDLKQMASPFTLVIDDPSGNSFVENPHA
PQKDNALVITYYDRTPQQAEMLGLQAEAPEEKAEEEDLRNEVLQFNTNCPECNAPAQTNMKLVQIPHFKE
VIIMATNCENCGHRTNEVKSGGAVEPLGTRITLHITDPSDMTRDLLKSETCSVEIPELEFELGMAVLGGK
FTTLEGLLKDIRELVTKNPFTLGDSSNPDQSEKLQEFSQKLGQIIEGKMKAHFIMNDPAGNSYLQNVYAP
EDDPEMKVERYKRTFDQNEELGLNDMKTEGYEAGLAPQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH