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Report for CCDS19748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19748.1 Public Mus musculus 5 Ywhag 23 108 98 CCDS HistoryNCBI Gene:22628Re-query CCDS DB by CCDS ID:19748.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055808.5 ENSMUSP00000051223.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055808.5Link to Ensembl Protein Viewer:ENSMUSP00000051223.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000055808Re-query CCDS DB by Protein ID:ENSMUSP00000051223
Original member Current member EBI ENSMUST00000198270.1 ENSMUSP00000143631.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198270.1Link to Ensembl Protein Viewer:ENSMUSP00000143631.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198270Re-query CCDS DB by Protein ID:ENSMUSP00000143631
Original member Current member NCBI NM_018871.3 NP_061359.2 Accepted alive Link to Nucleotide Sequence:NM_018871.3Link to Protein Sequence:NP_061359.2Re-query CCDS DB by Nucleotide ID:NM_018871Re-query CCDS DB by Protein ID:NP_061359Link to BLAST:NP_061359.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061359.2 247 P61982 247 100% 0 0

Chromosomal Locations for CCDS 19748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 135910995 135911651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 135934323 135934409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGGTGGACCGCGAGCAACTGGTGCAGAAAGCCCGGCTGGCCGAGCAGGCGGAGCGCTACGACGATATGG
CC
GCGGCCATGAAGAACGTGACCGAGCTGAACGAACCACTGTCCAATGAGGAACGGAACCTCCTGTCGGT
G
GCCTACAAGAACGTGGTGGGGGCTCGCCGCTCCTCCTGGAGGGTCATCAGCAGCATCGAGCAGAAGACG
TCT
GCGGACGGCAACGAGAAGAAGATCGAGATGGTCCGAGCCTACCGGGAGAAGATCGAGAAGGAGCTGG
AG
GCCGTGTGCCAGGACGTGCTGAGCCTGCTGGACAACTACCTGATCAAGAACTGCAGCGAGACCCAGTA
C
GAGAGCAAGGTGTTCTACCTGAAGATGAAAGGGGACTATTACCGTTACCTGGCAGAAGTGGCCACCGGG
GAG
AAGAGGGCGACCGTGGTGGAGTCGTCTGAGAAGGCCTACAGCGAAGCCCACGAGATCAGCAAGGAGC
AC
ATGCAGCCCACCCACCCCATCCGGCTGGGCCTGGCGCTCAACTACTCGGTTTTCTACTATGAGATCCA
G
AACGCCCCGGAGCAAGCGTGCCACCTGGCCAAGACCGCCTTCGACGACGCCATCGCCGAGCTCGACACT
CTG
AACGAGGACTCCTACAAGGACTCCACTCTGATCATGCAGCTGCTCCGAGACAACCTCACGCTCTGGA
CG
AGCGACCAGCAAGACGACGACGGCGGTGAAGGCAACAACTAA


Translation (247 aa):
MVDREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKT
S
ADGNEKKIEMVRAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATG
E
KRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDT
L
NEDSYKDSTLIMQLLRDNLTLWTSDQQDDDGGEGNN




Links Key
 Links to:   History report
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  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser