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Report for CCDS29886.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29886.1 Public Mus musculus 19 Taf5 23 108 98 CCDS HistoryNCBI Gene:226182Re-query CCDS DB by CCDS ID:29886.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29886.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026027.6 ENSMUSP00000026027.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026027.6Link to Ensembl Protein Viewer:ENSMUSP00000026027.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000026027Re-query CCDS DB by Protein ID:ENSMUSP00000026027
Original member Current member NCBI NM_177342.3 NP_796316.2 Accepted alive Link to Nucleotide Sequence:NM_177342.3Link to Protein Sequence:NP_796316.2Re-query CCDS DB by Nucleotide ID:NM_177342Re-query CCDS DB by Protein ID:NP_796316Link to BLAST:NP_796316.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796316.2 801 Q8C092 801 99.7503% 0 2

Chromosomal Locations for CCDS 29886.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47067765 47068326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47070981 47071218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47074813 47075128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47075736 47075899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47075997 47076132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47077274 47077394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47078768 47078897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47080541 47080705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47081809 47081986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47082144 47082321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47082427 47082644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2406 nt):
ATGGCGGCGCTGGCGGAGGAGCAGACGGAGGTGGCGGTCAAGCTAGAGCCTGAGGGACCGCCGACGCTGC
TACCTCCGCAGGCTGGCGACGGCGCAGGCGAGGGGAGCGGCGGCACTCCCAACAACGGCCCCAACGGCGG
CGGCGGCGGGAATGTGGCAGTGGCAGCGGCGGCCGGCGGGGACGGCGGGACCCCCAAGCCTGGGGTGGCT
GTCTCCGCCGCTGCCCCGGCGGGGGCGGCCCCGGTGCCCGCCGCTCCGGCGGAGGCCGGCGCTCCCCACG
ACCGACAGACCCTCCTGGCCGTGCTGCAATTCCTCCGGCAGAGCAACCTCCGCGAGGCCGAAGAGGCGCT
GCGCCGGGAGGCCCGGCTGCTGGAGGAGGCGGTGGCGGGCTCCGGAGCTCCGGGAGAGTTGGACGGGGCC
GGCGCGGAGGCGGCCAGCGCGCTTCTCAGCCGGGTCACCGCTTCAGTTCCCGGCTCTGCGGCCCCCGAGC
CTCCGGGGACGGGCGCCTCGGTGACCTCGGTGTTCTCGGGTTCAGCCTCAGGTCCTGCGGCTCCGGGAAA
GGTTGCAAGTGTAGCTGTGGAAGACCAGCCAGACGTCAGTGCTGTCTTGTCGGCCTACAACCAACAAGGA
GACCCTACAATGTATGAAGAATACTACAGTGGACTGAAACACTTCATTGAATGTTCTCTGGACTGCCATC
GAGCAGAGTTATCCCAACTCTTTTATCCTCTGTTTGTACATATGTACTTGGAGCTAGTTTATAATCAACA
TGAAAATGAAGCAAAATCATTCTTTGAGAAGTTCCATGGAGATCAGGAATGTTACTACCAGGATGACCTA
CGAGTGTTATCTAGTCTTACCAAAAAGGAGCACATGAAAGGGAACGAGACCATGCTGGACTTTCGGACGA
GTAAATTCGTTCTCCGCATTTCCCGGGACTCGTACCAGCTCTTGAAGCGGCATCTCCAGGAGAAGCAGAA
CAATCAGATCTGGAACATCGTGCAGGAGCACCTCTACATCGACATCTTCGACGGGATGCCTCGCAGTAAG
CAACAGATCGACGCCATGGTGGGCAGCCTGGCAGGAGAGGCGAAACGAGAGGCGAACAAATCGAAGGTAT
TTTTTGGTTTACTAAAAGAACCAGAAATTGAGGTGCCTTTGGATGATGAGGACGAAGAAGGAGAAAATGA
AGAAGGAAAACCTAAAAAGAAGAAGCCTAAGAAGGATAGTATTGGCTCTAAAAGCAAAAAACAAGATCCC
AATGCCCCGCCTCAAAACAGAATTCCTCTTCCTGAGTTAAAAGATTCAGACAAACTGGACAAAATAATGA
ATATGAAAGAAACTACCAAACGAGTGCGCCTCGGGCCAGACTGTTTACCCTCCATTTGTTTCTATACATT
CCTTAATGCTTACCAGGGCCTCACTGCAGTGGATGTCACTGATGACTCTAGTCTGATTGCTGGAGGTTTT
GCTGATTCAACTGTCAGAGTGTGGTCTGTGACCCCTAAAAAGCTTCGTAGTGTCAAACAAGCATCAGATC
TTAGTCTTATAGACAAAGAATCAGATGATGTCTTAGAGAGAATCATGGATGAGAAAACTGCAAGTGAGTT
GAAGATTTTGTATGGTCACAGTGGGCCTGTCTATGGAGCCAGCTTCAGTCCGGATAGGAACTACCTACTC
TCCTCTTCAGAGGATGGAACTGTTAGACTCTGGAGCCTTCAGACTTTCACTTGCTTGGTTGGGTATAAAG
GACACAACTACCCAGTATGGGACACACAGTTTTCTCCATACGGATATTATTTCGTGTCAGGAGGCCATGA
CCGAGTAGCTCGGCTTTGGGCTACCGATCACTATCAGCCTTTGAGGATATTTGCTGGCCATCTTGCTGAT
GTGAATTGCACTAGATTTCATCCAAATTCGAACTATGTTGCTACGGGCTCTGCAGACAGAACTGTGCGGC
TCTGGGATGTCCTCAATGGTAACTGTGTAAGAATCTTCACTGGGCACAAGGGACCAATTCATTCCTTGAC
ATTTTCTCCCAATGGGAGATTCCTGGCTACAGGAGCAACAGATGGCAGAGTACTTCTTTGGGATATTGGA
CACGGCTTGATGGTTGGAGAATTAAAAGGCCACACTGATACAGTGTGTTCACTTAGGTTTAGTAGAGATG
GTGAAATTTTGGCATCAGGTTCAATGGATAATACAGTCCGGTTATGGGACGCCGTCAAAGCGTTTGAAGA
CTTAGAGACTGATGACTTTACTACAGCCACCGGGCATATAAACCTACCTGAGAATTCCCAGGAGTTGTTA
TTGGGTACATATATGACCAAATCAACACCAGTTGTACACCTACATTTTACAAGAAGAAACTTGGTTCTAG
CTGCAGGAGCTTACAGTCCGCAATAA

Translation (801 aa):
MAALAEEQTEVAVKLEPEGPPTLLPPQAGDGAGEGSGGTPNNGPNGGGGGNVAVAAAAGGDGGTPKPGVA
VSAAAPAGAAPVPAAPAEAGAPHDRQTLLAVLQFLRQSNLREAEEALRREARLLEEAVAGSGAPGELDGA
GAEAASALLSRVTASVPGSAAPEPPGTGASVTSVFSGSASGPAAPGKVASVAVEDQPDVSAVLSAYNQQG
DPTMYEEYYSGLKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDL
RVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSK
QQIDAMVGSLAGEAKREANKSKVFFGLLKEPEIEVPLDDEDEEGENEEGKPKKKKPKKDSIGSKSKKQDP
NAPPQNRIPLPELKDSDKLDKIMNMKETTKRVRLGPDCLPSICFYTFLNAYQGLTAVDVTDDSSLIAGGF
ADSTVRVWSVTPKKLRSVKQASDLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLL
SSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLAD
VNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIG
HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLWDAVKAFEDLETDDFTTATGHINLPENSQELL
LGTYMTKSTPVVHLHFTRRNLVLAAGAYSPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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