NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29402.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29402.1 Public Mus musculus 19 Ndufs8 23 108 98 CCDS HistoryNCBI Gene:225887Re-query CCDS DB by CCDS ID:29402.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29402.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075092.7 ENSMUSP00000074600.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075092.7Link to Ensembl Protein Viewer:ENSMUSP00000074600.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075092Re-query CCDS DB by Protein ID:ENSMUSP00000074600
Original member Current member EBI ENSMUST00000235847.1 ENSMUSP00000158029.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000235847.1Link to Ensembl Protein Viewer:ENSMUSP00000158029.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000235847Re-query CCDS DB by Protein ID:ENSMUSP00000158029
Original member Current member EBI ENSMUST00000237341.1 ENSMUSP00000158327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237341.1Link to Ensembl Protein Viewer:ENSMUSP00000158327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237341Re-query CCDS DB by Protein ID:ENSMUSP00000158327
Original member Current member EBI ENSMUST00000236801.1 ENSMUSP00000158541.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000236801.1Link to Ensembl Protein Viewer:ENSMUSP00000158541.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000236801Re-query CCDS DB by Protein ID:ENSMUSP00000158541
Original member Current member NCBI NM_001271443.1 NP_001258372.1 Accepted alive Link to Nucleotide Sequence:NM_001271443.1Link to Protein Sequence:NP_001258372.1Re-query CCDS DB by Nucleotide ID:NM_001271443Re-query CCDS DB by Protein ID:NP_001258372Link to BLAST:NP_001258372.1
Original member Current member NCBI NM_001271444.1 NP_001258373.1 Accepted alive Link to Nucleotide Sequence:NM_001271444.1Link to Protein Sequence:NP_001258373.1Re-query CCDS DB by Nucleotide ID:NM_001271444Re-query CCDS DB by Protein ID:NP_001258373Link to BLAST:NP_001258373.1
Original member Current member NCBI NM_144870.5 NP_659119.2 Accepted alive Link to Nucleotide Sequence:NM_144870.5Link to Protein Sequence:NP_659119.2Re-query CCDS DB by Nucleotide ID:NM_144870Re-query CCDS DB by Protein ID:NP_659119Link to BLAST:NP_659119.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258372.1 212 Q8K3J1 212 100% 0 0
NP_001258373.1 212 Q8K3J1 212 100% 0 0
NP_659119.2 212 Q8K3J1 212 100% 0 0

Chromosomal Locations for CCDS 29402.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 3908943 3909074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3909153 3909281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3910898 3911070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3911161 3911256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3911566 3911616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 3911689 3911746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (639 nt):
ATGTATCGCCTGAGCTCATCAATGCTGCCACGGGCCTTGGCCCAGGCCATGCGCACAGGACATCTTAATG
GACAAAGCCTTCATAGCAGCGCAGTGGCGGCAACGTACAAGTATGTGAATAAGAAGGAACAGGAGTCTGA
GGTGGACATGAAGTCCGCAACTGACAATGCAGCTCGGATTCTGATGTGGACAGAACTCATCCGAGGACTG
GGCATGACCCTAAGTTACCTCTTTCGAGAGCCTGCCACCATCAACTACCCCTTTGAGAAGGGCCCACTGA
GTCCGCGCTTCCGTGGGGAGCATGCACTGCGCCGCTACCCATCTGGAGAGGAGCGTTGCATTGCCTGCAA
ACTCTGTGAGGCCATCTGTCCTGCACAGGCCATCACCATTGAGGCTGAGCCAAGAGCCGATGGCAGCCGC
CGAACGACACGCTATGACATCGACATGACCAAGTGTATCTACTGTGGTTTCTGCCAGGAAGCCTGCCCTG
TTGATGCCATTGTGGAGGGCCCCAACTTCGAGTTCTCCACCGAGACACACGAGGAGTTGCTGTACAACAA
GGAGAAGCTACTCAACAATGGAGACAAGTGGGAGGCCGAGATCGCTGCCAACATCCAGGCTGACTACCTG
TACCGGTGA

Translation (212 aa):
MYRLSSSMLPRALAQAMRTGHLNGQSLHSSAVAATYKYVNKKEQESEVDMKSATDNAARILMWTELIRGL
GMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPRADGSR
RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYL
YR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH