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Report for CCDS50310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50310.1 Public Mus musculus 18 Alpk2 23 108 98 CCDS HistoryNCBI Gene:225638Re-query CCDS DB by CCDS ID:50310.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50310.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035548.15 ENSMUSP00000048752.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035548.15Link to Ensembl Protein Viewer:ENSMUSP00000048752.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035548Re-query CCDS DB by Protein ID:ENSMUSP00000048752
Original member Current member NCBI NM_001037294.1 NP_001032371.1 Accepted alive Link to Nucleotide Sequence:NM_001037294.1Link to Protein Sequence:NP_001032371.1Re-query CCDS DB by Nucleotide ID:NM_001037294Re-query CCDS DB by Protein ID:NP_001032371Link to BLAST:NP_001032371.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001032371.1 2144 Q91ZB0 2144 100% 0 0

Chromosomal Locations for CCDS 50310.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 65266071 65266290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65276646 65276694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65280878 65281095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65289678 65289766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65291256 65291530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65294080 65294115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65294212 65294339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65300014 65300161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65304450 65307813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65349028 65350708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65372721 65372838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 65378016 65378124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (6435 nt):
ATGACAGATCCAGGCTGCCCCGAGAGGCGCACGCTATGTTTCTTATCAACGTTACTTTCCCAGAAGGTTC
CGGAGAAGTCTGACGTCGTGCTTCGATGCATGATAGCTGGTCAGCCCAAGCCAGAGGTGACTTGGTATAA
GAATGGTCAAGCCATAGACTTGGGAGGCACTGTTTCCAGTTATGAGTTCTTTGAGAACCAGTATATTCAT
TTGTTGCATCTCTCGTGCTGTACCCAGAGCGACGCCGCTGTTTACCAGGTCTCGGCAAGAAACTGCGTGG
GGATGATCTGCTGTTCAGCATCCCTCGAGGTCCAGTGTCTGCAGGACCCACAGGTCTCTCCTGATCCTGG
AGGCGGCAGGGACGCGGCTGGCGAGTGTAAAACAGAGATACGTGAAGAAGACAGCATAAACCACACGGAT
GAGAAATGGAATCCTTGTAAGAAAGGAGAAAGTACAGCTGATTCCTTCCTCGACAAATTCAACCATTTGA
GTTCACCCCAGATAGTGGCTAGGGGTGACTCTGGTGCTTCCAATTCTGAGAATCCCCAATATATTAAAGA
GACGAGACAAAGGATGGGGCAGTACAATTCAAATAACATGCAAGAAAATTCTTTTAATTCAAATAACACT
GCTGAAAAACAAGATGTATCCCAGCTCTGGACAGTGAATGCCACTGTGCCAGGGTTAGTTAGTGATGGCC
TAGGATACGAAGAATCTAATGAGAGTGTCAGCCCTAGTCATCAAACCCCCAAAGTACAGAAATACATCAG
TTTCAGTCTTCCATTGCCGGAGACAACCCTGGGTCCTTACCCAGAAGACAGCAACTCCATCAACATGCAG
CCGGGACCCCAGGTTTCCAGCGAAGACTCTGACAGTGACTATGAACTTTGCCCAGAGATAACCCTAACCT
ACACGGAGGAGTTTTCGGATGATGACCTGGAGTATCTGGAATGTTCCGATGTTATGACGGATTACTCTAA
TGCGGTCTGGCAAAGGAGCCTGCAAGGGACTGACCGAGTTTTTTTATTAGAAAGCGATGACGAAGAGATG
GAATTCAATGAGTGTGGTCTGGGTGGGTGTGAGCATTTCTTCACTGAAATGGGTTGTGGGCCTCAGGTGT
CGGGTGGCATGTGGTCTATGAATGTTGCCACTGGCTTCTGTAGTTATCACTCACAACCTCAGGAAGTGAG
GGTTAGGAGCAGCGGAACCTCAGGGCATAGCCCGTTACCCCTGCATTCAGAAATGACTCTTACCCTGGGA
CCTCACCAGGATGAAACAGCTAAGATGACAGAACCGGGGAGGGCTCCACTCCCTACTGCTCCCGAGGCTG
TTGAAAATGATTGTTCAGGAATTCGGGGAGAAACCAGAGACAACCCTGAAGCAGGAGAGGAATTCTCCGG
TGACAATCTACAGACTATGGATAAGGTAGAGACAGAGGCATCAGTGAAGCCCTTGTCTGGGGGCTCAGAT
AAGACAGAGGTGAAGCAGGGTTTGGAAAGCCTGGCTCGGGAACGCACAGACGAAAAGTACCCAGGCAGCA
AGAAGGCAGCCCTGAGACCCACCAGGGCGAGGCGGCCCGGAATGAAGGCAAACACCAAGAAGCAGCTGTT
GAGAGACAGTGCCCCCAAAGGCACTCTAGATCTCCTCCCCAAAGAACCGACTAGGCAACCCTTACCCGGG
AGCTATGGACAAGAGCCCACACACACGGAAGCAGGAGCTCCTGGCTGGGATTCCCACTTCCACGCAGAAG
TGTGTATTCCACTTCCTGCAGAGCAAGACTCCAAAATCCTTCGACCACCAGCAGACCCACTTTCCAAGGA
AGAGGACAGCAGCTTCGAGGGAGGTGGGGCACTGCTTAATAAATTATTTGAAGCAAGCCAGATTCCAGAC
CGGACTGACCATCTTCAGATGCAAATTCAGGAAACCATTGGGGAGAGCAGTTCTCTCGACCAGATGTTGG
CCTTTTCAGTGCCTGCTGAGGAGTCATCTACATTTGCTGGGGCCACAACACATTCTGTCTCCAACTTGAG
TGAGATCAACAGGGAAAATCTGTCATTGGCCCAATACCCAGGACTGGAAAGCTGTCCTCAAAGCCTCCAG
CAGGAAGGCAGACCAAACAGAGACAGAGACTTGCCTGGTGCTCTCTGGGCAGAATCAGCCTGTGAACTGA
GTCTCCTAGAAGACAATGAGGAAGAAGAGTCGCAGCCTCCAGCCTCAGTGGCTCTCCCTCAGGGTGATGG
TGTCCCCTGCAGGGAGCCAGAGGGTCTCTCTGATTCTTTCCCCCAGCCCACTGCTCCCTCCCTCCCCCTG
GAAAATGTGGGCAGTGGGTCAAGGGTCAGAGAAGCTGCAGGTGGGGTGGGGTGTTTTGAAGCCGGTGACC
AAGAAACATGTTATGCTACCATGGATCTCCTTGTTGGAGCACCAGTTGATAAATATTTGCCTCAAGAAAT
TTGCCCCGAGGACTTGGAGCTGACAGAAGGTCAAAGCGAAGTGTGTGATTTATGTTCTCCTGACAAGATA
CTGGCTGTTCTACAGACACAAGGTTCTGAGCCTCCACGGTCCACAGACAAGCGCAGCCAGGATGGCAAGT
CAGCCGAGGGCCTTCTTTTTAACAGTACCTTCACCTGGGACACGGCAAAGGAGGCCAGTGAAGATGCTGT
GGGAGAGACAGCAGCTGATGTGGAGAATCCTCCCTCCACCTTCTCTTCTACGCTACCCTACAGTGAAAGA
GGGTTTGGGGAGACACAACCCCTTTGTTCTGAGACTATCTCCTTTGTAAAGGATAGTGAAGGGAGCTACA
GAAGTTCCAGTCTCAGCATCCCAGCTGCCATAGACACACTTGCCAGCTACAGTTCTGACAGGGAGTGCTC
AAAAGAGCAGTCAGCCGAATCAACTGCTAATGTCGACTGTCATCAGGTGACCAGGGAGATGGAGGGCATA
TCAACTAATGCCGCTGAGGTCCACGAAATCAAATGCCACTCCGTTTCTGTCCCCCAGGACAATGACTTTG
ATGTTGGTGCTGACCAGGTCTCGTGTGAGGCACGAGATGAAGATAATTCCCAATCTCTTCCAGACGACGA
CTCACAGTCAGGTCGTTCATTAAGTAGCTCCACAGGTGAAGCAACCGGGGAGACTCTGGTGCCAGCACCC
AGCAGTGCAGGAGATCATGGCCACTTCTCCATGCCCGAGGGACAGGGTTTGTGTAGCAGGGCTCTTCAGA
TGGATAACCAGCCTGTGTGTCAGAGCCAGGCTATGGAGGGAGCCCACAGCAGAGGCCTTGAGGAGCACTT
CCAAGAAAAGGGAAGTGGAATGAAGCATGGCATCCGGCCACAGAGCACATCCCACCAGGTTTCTCTTTCT
GCAAATGACTTCCAAGAAATTTTGCCCTCCATACCCACCATGCAACAGGAGACCAATGTGGAACCCTTGG
AGCACTCCCTAGCAGATTCCAGGGAAGAAATTGAGTGTAGCTCAGACCCGAGGACCAGTGACTTGGTGGT
GGCTGAGAAGACTGTGGGAGAAGACAGTCATTTGGTAGTCAGTGTCCCAGCTCTCCCTGACATCCTCCTT
GGAGAGAAAGATGACGTTGGGCTAGGAAGTTGGGCTGTGGGCGGCAAAGTGAAGATCATAACTCTAGAAG
CTCCCGTCTTTGAAATCTGGCCACCAGAACTAGTGAGGCACCCTGGGTACAAGGAGGCAGAAGCTGGTCT
CACCATGCCTGGTAGGAGCTGGGCTCTGTCTGACATCCTCAGAGCAGGTGCCACCAGATCTGAGCCAGGT
GCCTTGGGAGGAGCAGCATGGGTTCCCAGCCCCCAGGCTGATGCTCTCATGGCCCTTGGAGCGAACAGGG
ACACCTGGCTAGGTGCTGCACCAGACAGACAAGCAAACTGCAATTGTCTGTCTTCCCAGTGTCTGAGTCA
ACCCCGATTCCTGGAGTCATCTGTAGACCCTGTTGAGGACAAGGAGTTAGAGGTCACGGACTCTCCATCA
GAGGTTTCCAAAACTGGAGAGATGGAAATGCCTGAGACTCTGAATGAGGAACAGGAGGAAACCCAGCAGA
TACTGCGTCACCCCGCCGTTGTTAACCAGTCGGTGAACTTCCCTAGGATCCTGGAATCCTCTGTGGACCC
CATTGACGACAGGGGTGAGCTGGAGGGTGTCTGGCCCGAGAAGCCAGAGCCCTCTGACTCCAGCGTAGAA
GGAAACGAATTCATTGTTGGAAACACGTGTCAGAGGGTAGACATCCAACCTGCTAGCCTACAGCTCCCAC
ATCCCCAGGACAGCGGGGAAATCATTCCATATGAACACACAACCAACCAAAATCGCGTAGATGGAGAGAG
AGCAGAAGCCAAAACCAGTCTGCCGGATAAAGCCAAAGCGGAAGCAGAAGCTGTTGTTTGGCAGGCCCAG
GGGCCTGGTGAAGAGGGACAAGGAATTCCAAGTGTATGCAGCATGAGCCAAACACAAGATGGTGGTGACA
GAAGCCTAGGAGAAGCTGGGCAAAGGGGAACGGATGAGACCGAGGTCATTTCCCCCCTGTCTCCTCTTTC
TAGCTGTCTCACAGGAGTGACACATACATGTGTCAAGGCTGAAACCAACAACTCCACAGGCCACATTTAT
GGCGGATCTGAGCCCAGAACCCGTCAAAGTGTAATTCCTATGAAGACAGAAAAGGGAACTATCGAGAGCA
AGTGTGGGAACCATGTGCGCTCTTCAGATGATCTCACAAACACACCTTGTACTTCATCTCCCAAAGGAAA
TGTCACACGCTTGTCAATAAGCCATGGCCTGGAGGAACTGAAATCAGAGAAGCTGCAGATTGCGGAAACC
AAACCCCTAAACTCATCTGACTCCCCAACAATGACCTTAGCTCTCATTTCAGGAGAATGTGAGTCAGAGA
AAGACCCCAAAAGCTTGTTACGTAGGGACCCATGTCCAAAGGGCTCCACCCTGGATAGCGGGAAGAAGTC
CAGAGACCAACAGCAGAAGCCTGTGGCAGCCCAGGTCAGCAAGGCACCTGGGGACCAATCAGCAATGGCT
GGGTCAGAGGAGGGCAAGAAGAAGCAAGAGGCTTCGGGGAGTGGACACTTGACTGCAGGGATAAAGAAGA
AAATTCTATCCAGGGTCGCAGCCCTGAGACTGAGGCTGGAGGAAAAGGAAAATTCGAGGAAGAACTCCAT
CGTGAAGAAGACACCTAAGTTTGAAAGGTCCTTATCCCGCACTGATGAGAAAAGAGACCCCAAAAGGGCC
CCTTGCAAAGCTGAAGGGAAAGCTCCAGTATTGCTGAAGAGGATCCAGGCCGAGATGGCTCCCGAGCACT
CCGGAAATATAAAGTTGAGCTGCCAGTTTTCAGAAATCCATGAAGACTCTACCGTCTGCTGGACAAAAGA
TTCCAAGTCGATAGCCCAGGCCAAGAAAAGCGCAGGGGACAACTCCAGTGTTTCCTTGGCCATCGTCCAA
GCTGGTCAGAAGGACCAGGGCCTGTATTACTGCTGCCTCAAGAACAGTTATGGAAAAGTCACTGCTGAGT
TTAACCTCACAGCTGAAGTTCTCAAACAGCTTTCAAGTCACACAGAATATAGAGGATGTGAAGAGATTGA
ATTCAGCCAGCTCATCTTCAAAGAAGATGTTTTCAATGACAGCTACTTCGGGGACCACCTACGTGGCCAG
ATCTCCACGGAGGAGCTTCACTTTGGCGAAGGGGTGCACCGCAAAGCTTTCCGGAGCAAGGTGATGCAGG
GCCTCATGCCGGTCTTCCAGCCCGGCCACGCATGCGTACTCAAGGTGCACAATGCCGTCGCCCATGGGAC
CAGAAACAATGACGAACTTGTGCAGAGGAACTACAAACTGGCTGCCCAGGAATGCTACGTCCAGAATACT
GCCAGATACTACGCCAAGATCTACGCCGCTGAAGCACAGCCTCTGGAAGGCTTCGGAGAGGTGCCGGAGA
TCATTCCTATTTTCCTTATCCATCGGCCCGAGAACAACATCCCATATGCCACAGTGGAAGAAGAGCTGAT
TGGAGAATTCGTGAAGTATTCCATCCGGGACGGGAAGGAAATCAACTTCCTCAGACGAGATTCAGAGGCT
GGCCAGAAATGTTGCACCTTCCAGCACTGGGTATACCAGAAAACAAGTGGCTGTCTCCTGGTCACGGACA
TGCAGGGTGTGGGAATGAAGTTAACTGACGTTGGCATAGCAACACTAGCTAGAGGGTACAAAGGATTTAA
GGGCAACTGTTCCATGACCTTCATTGATCAGTTCAGAGCGCTGCATCAGTGTAACAAGTACTGTAAAATG
CTGGGGCTGAAATCCCTTCAAAACAACAGCCAGAAACCCAAGAAGCCCATCGTCGGGAAAGGCAGGGTTC
CGACAAACGCCACGCAGGTGAAGACGCCTGAGTCTGAGACGCCGCCCGCAGAAAGAAAAACCTAG

Translation (2144 aa):
MTDPGCPERRTLCFLSTLLSQKVPEKSDVVLRCMIAGQPKPEVTWYKNGQAIDLGGTVSSYEFFENQYIH
LLHLSCCTQSDAAVYQVSARNCVGMICCSASLEVQCLQDPQVSPDPGGGRDAAGECKTEIREEDSINHTD
EKWNPCKKGESTADSFLDKFNHLSSPQIVARGDSGASNSENPQYIKETRQRMGQYNSNNMQENSFNSNNT
AEKQDVSQLWTVNATVPGLVSDGLGYEESNESVSPSHQTPKVQKYISFSLPLPETTLGPYPEDSNSINMQ
PGPQVSSEDSDSDYELCPEITLTYTEEFSDDDLEYLECSDVMTDYSNAVWQRSLQGTDRVFLLESDDEEM
EFNECGLGGCEHFFTEMGCGPQVSGGMWSMNVATGFCSYHSQPQEVRVRSSGTSGHSPLPLHSEMTLTLG
PHQDETAKMTEPGRAPLPTAPEAVENDCSGIRGETRDNPEAGEEFSGDNLQTMDKVETEASVKPLSGGSD
KTEVKQGLESLARERTDEKYPGSKKAALRPTRARRPGMKANTKKQLLRDSAPKGTLDLLPKEPTRQPLPG
SYGQEPTHTEAGAPGWDSHFHAEVCIPLPAEQDSKILRPPADPLSKEEDSSFEGGGALLNKLFEASQIPD
RTDHLQMQIQETIGESSSLDQMLAFSVPAEESSTFAGATTHSVSNLSEINRENLSLAQYPGLESCPQSLQ
QEGRPNRDRDLPGALWAESACELSLLEDNEEEESQPPASVALPQGDGVPCREPEGLSDSFPQPTAPSLPL
ENVGSGSRVREAAGGVGCFEAGDQETCYATMDLLVGAPVDKYLPQEICPEDLELTEGQSEVCDLCSPDKI
LAVLQTQGSEPPRSTDKRSQDGKSAEGLLFNSTFTWDTAKEASEDAVGETAADVENPPSTFSSTLPYSER
GFGETQPLCSETISFVKDSEGSYRSSSLSIPAAIDTLASYSSDRECSKEQSAESTANVDCHQVTREMEGI
STNAAEVHEIKCHSVSVPQDNDFDVGADQVSCEARDEDNSQSLPDDDSQSGRSLSSSTGEATGETLVPAP
SSAGDHGHFSMPEGQGLCSRALQMDNQPVCQSQAMEGAHSRGLEEHFQEKGSGMKHGIRPQSTSHQVSLS
ANDFQEILPSIPTMQQETNVEPLEHSLADSREEIECSSDPRTSDLVVAEKTVGEDSHLVVSVPALPDILL
GEKDDVGLGSWAVGGKVKIITLEAPVFEIWPPELVRHPGYKEAEAGLTMPGRSWALSDILRAGATRSEPG
ALGGAAWVPSPQADALMALGANRDTWLGAAPDRQANCNCLSSQCLSQPRFLESSVDPVEDKELEVTDSPS
EVSKTGEMEMPETLNEEQEETQQILRHPAVVNQSVNFPRILESSVDPIDDRGELEGVWPEKPEPSDSSVE
GNEFIVGNTCQRVDIQPASLQLPHPQDSGEIIPYEHTTNQNRVDGERAEAKTSLPDKAKAEAEAVVWQAQ
GPGEEGQGIPSVCSMSQTQDGGDRSLGEAGQRGTDETEVISPLSPLSSCLTGVTHTCVKAETNNSTGHIY
GGSEPRTRQSVIPMKTEKGTIESKCGNHVRSSDDLTNTPCTSSPKGNVTRLSISHGLEELKSEKLQIAET
KPLNSSDSPTMTLALISGECESEKDPKSLLRRDPCPKGSTLDSGKKSRDQQQKPVAAQVSKAPGDQSAMA
GSEEGKKKQEASGSGHLTAGIKKKILSRVAALRLRLEEKENSRKNSIVKKTPKFERSLSRTDEKRDPKRA
PCKAEGKAPVLLKRIQAEMAPEHSGNIKLSCQFSEIHEDSTVCWTKDSKSIAQAKKSAGDNSSVSLAIVQ
AGQKDQGLYYCCLKNSYGKVTAEFNLTAEVLKQLSSHTEYRGCEEIEFSQLIFKEDVFNDSYFGDHLRGQ
ISTEELHFGEGVHRKAFRSKVMQGLMPVFQPGHACVLKVHNAVAHGTRNNDELVQRNYKLAAQECYVQNT
ARYYAKIYAAEAQPLEGFGEVPEIIPIFLIHRPENNIPYATVEEELIGEFVKYSIRDGKEINFLRRDSEA
GQKCCTFQHWVYQKTSGCLLVTDMQGVGMKLTDVGIATLARGYKGFKGNCSMTFIDQFRALHQCNKYCKM
LGLKSLQNNSQKPKKPIVGKGRVPTNATQVKTPESETPPAERKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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