NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS29113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29113.1 Public Mus musculus 18 Lims2 23 108 98 CCDS HistoryNCBI Gene:225341Re-query CCDS DB by CCDS ID:29113.1See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025254.8 ENSMUSP00000025254.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025254.8Link to Ensembl Protein Viewer:ENSMUSP00000025254.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000025254Re-query CCDS DB by Protein ID:ENSMUSP00000025254
Original member Current member NCBI NM_144862.4 NP_659111.1 Accepted alive Link to Nucleotide Sequence:NM_144862.4Link to Protein Sequence:NP_659111.1Re-query CCDS DB by Nucleotide ID:NM_144862Re-query CCDS DB by Protein ID:NP_659111Link to BLAST:NP_659111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_659111.1 341 Q91XD2 341 100% 0 0

Chromosomal Locations for CCDS 29113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 31931540 31931550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31941740 31941899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31944139 31944205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31944436 31944556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31954436 31954585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31955258 31955408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31956258 31956350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31956953 31957001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31957238 31957313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 31957843 31957990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGACGGGAAGCAACATGTCTGAGTGTTTGGCCGATGCCATGTGCCAGCGCTGCCAGGCCCGGTTTGCCC
CCACAGAGCGCATCGTCAACAGCAATGGGGAACTCTACCATGAGCACTGCTTTGTGTGTGCACAGTGCTT
CCGGCCATTTCCCGAGGGACTCTTCTACGAGTTTGAGGGCCGGAAGTACTGTGAACATGACTTCCAAATG
CTATTTGCTCCATGCTGCGGATTCTGTGGTGAATTTGTCATTGGCCGCGTGATCAAGGCCATGAACGCCA
ACTGGCATCCTGGCTGCTTCCGCTGTGAATTGTGTGATGTGGAGCTGGCTGACCTGGGCTTTGTGAAGAA
CGCAGGCAGGCACCTCTGCCGGCCTTGCCACAACCGTGAGAAGGCCAAGGGCTTGGGCAAATTCATCTGC
CAGCGGTGCCACCTCGCCATCGACGAACAGCCCCTCATGTTCAAGAATGATCCCTACCACCCGGACCACT
TCAGCTGCTCCAACTGTGGGAAGGAGCTGACCTCCGATGCCCGAGAGCTGAAGGGTGAGCTCTACTGCCT
GCCTTGTCACGACAAGATGGGCATCCCCATCTGTGGGGCTTGCCGCCGGCCCATTGAGGGCCGCGTGGTC
AATGCGCTGGGCAAACAGTGGCATGTGGAGCACTTTGTCTGCGCCAAGTGTGAGAAGCCATTCCTGGGGC
ACCGGCACTATGAGAAGAAGGGCCTAGCATACTGTGAGACCCACTACAACCAGCTCTTTGGGGATGTCTG
CTACAACTGCAGTCATGTGATCGAGGGTGACGTGGTGTCAGCCCTCAGCAAAGCCTGGTGTGTGAACTGC
TTTTCCTGTTCCACCTGCAACATGAAGCTCACTCTAAAGAACAAGTTTGTGGAGTTCGATATGAAGCCCG
TGTGTAAGAGGTGCTATGAAAGGTTCCCCCTGGAGCTGAAGAAGAGGTTGAAGAAGCTGTCCGACCTGAG
CTCCCGCAAGGCCCAGCCCAAGTCTGTGGACGTCAACTCACTCTAA

Translation (341 aa):
MTGSNMSECLADAMCQRCQARFAPTERIVNSNGELYHEHCFVCAQCFRPFPEGLFYEFEGRKYCEHDFQM
LFAPCCGFCGEFVIGRVIKAMNANWHPGCFRCELCDVELADLGFVKNAGRHLCRPCHNREKAKGLGKFIC
QRCHLAIDEQPLMFKNDPYHPDHFSCSNCGKELTSDARELKGELYCLPCHDKMGIPICGACRRPIEGRVV
NALGKQWHVEHFVCAKCEKPFLGHRHYEKKGLAYCETHYNQLFGDVCYNCSHVIEGDVVSALSKAWCVNC
FSCSTCNMKLTLKNKFVEFDMKPVCKRCYERFPLELKKRLKKLSDLSSRKAQPKSVDVNSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH