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Report for CCDS28537.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28537.1 Public Mus musculus 17 Rab40c 23 108 98 CCDS HistoryNCBI Gene:224624Re-query CCDS DB by CCDS ID:28537.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28537.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026826.13 ENSMUSP00000026826.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026826.13Link to Ensembl Protein Viewer:ENSMUSP00000026826.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000026826Re-query CCDS DB by Protein ID:ENSMUSP00000026826
Original member Current member EBI ENSMUST00000167626.7 ENSMUSP00000127546.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167626.7Link to Ensembl Protein Viewer:ENSMUSP00000127546.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167626Re-query CCDS DB by Protein ID:ENSMUSP00000127546
Original member Current member EBI ENSMUST00000179998.7 ENSMUSP00000136612.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179998.7Link to Ensembl Protein Viewer:ENSMUSP00000136612.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179998Re-query CCDS DB by Protein ID:ENSMUSP00000136612
Original member Current member NCBI NM_139154.2 NP_631893.1 Accepted alive Link to Nucleotide Sequence:NM_139154.2Link to Protein Sequence:NP_631893.1Re-query CCDS DB by Nucleotide ID:NM_139154Re-query CCDS DB by Protein ID:NP_631893Link to BLAST:NP_631893.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631893.1 281 Q8VHQ4 281 100% 0 0

Chromosomal Locations for CCDS 28537.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25883628 25883908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25884580 25884802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25885075 25885152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25890638 25890698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25891286 25891346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25919365 25919506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (846 nt):
ATGGGCACCCAGGGCAGTCCAGTGAAGAGCTACGATTACCTGCTCAAGTTCCTGCTGGTGGGCGACAGCG
ACGTGGGCAAAGGCGAGATCCTGGAGAGCCTTCAGGACGGCGCAGCTGAATCCCCGTACGCCTACAGCAA
CGGGATAGACTATAAGACTACCACCATCCTCCTGGATGGACGGCGTGTCAAGCTGGAGCTATGGGACACA
TCGGGCCAGGGAAGGTTCTGTACCATCTTCAGGTCCTACTCAAGGGGTGCACAGGGAATCCTTCTGGTGT
ACGACATCACCAACCGTTGGTCCTTTGATGGCATTGACCGGTGGATCAAGGAGATCGATGAGCATGCACC
TGGTGTTCCCCGGATCCTGGTTGGGAACCGGCTGCACCTGGCCTTCAAGCGGCAAGTTCCAACGGAGCAG
GCCAGAGCCTATGCAGAGAAGAACTGCATGACCTTCTTTGAAGTCAGCCCCCTGTGCAACTTCAACGTCA
TTGAGTCCTTCACTGAGCTCTCCCGTATCGTGCTCATGCGGCATGGCATGGAGAAGATCTGGAGACCCAA
TCGAGTTTTCAGCCTGCAGGACCTCTGCTGCCGTGCCATTGTCTCCTGTACCCCTGTGCACCTCATCGAC
AAGCTCCCACTACCTGTCACCATCAAAAGCCACCTCAAGTCCTTTTCCATGGCCAACGGCATGAACGCTG
TCATGATGCACGGCCGCTCCTACTCCCTGGCAAGTGGGGCCGGGGGCAGTGGCAGCAAGGGCAACAGCCT
TAAGAGGTCTAAGTCCATCCGGCCCCCTCAGAGCCCACCTCAGAACTGCTCTCGGAGCAACTGCAAGATC
TCCTAG

Translation (281 aa):
MGTQGSPVKSYDYLLKFLLVGDSDVGKGEILESLQDGAAESPYAYSNGIDYKTTTILLDGRRVKLELWDT
SGQGRFCTIFRSYSRGAQGILLVYDITNRWSFDGIDRWIKEIDEHAPGVPRILVGNRLHLAFKRQVPTEQ
ARAYAEKNCMTFFEVSPLCNFNVIESFTELSRIVLMRHGMEKIWRPNRVFSLQDLCCRAIVSCTPVHLID
KLPLPVTIKSHLKSFSMANGMNAVMMHGRSYSLASGAGGSGSKGNSLKRSKSIRPPQSPPQNCSRSNCKI
S


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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