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Report for CCDS29984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29984.1 Public Mus musculus X Was 23 108 98 CCDS HistoryNCBI Gene:22376Re-query CCDS DB by CCDS ID:29984.1See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29984.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033505.6 ENSMUSP00000033505.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033505.6Link to Ensembl Protein Viewer:ENSMUSP00000033505.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000033505Re-query CCDS DB by Protein ID:ENSMUSP00000033505
Original member Current member NCBI NM_009515.2 NP_033541.1 Accepted alive Link to Nucleotide Sequence:NM_009515.2Link to Protein Sequence:NP_033541.1Re-query CCDS DB by Nucleotide ID:NM_009515Re-query CCDS DB by Protein ID:NP_033541Link to BLAST:NP_033541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033541.1 520 P70315 520 100% 0 0

Chromosomal Locations for CCDS 29984.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 8081934 8081989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8085506 8085620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8085842 8086296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8086564 8086717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8086930 8086972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8087761 8087935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8088724 8088777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8088874 8088915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8089036 8089138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8089256 8089342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8089844 8089984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 8090291 8090428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGAATAGTGGCCCTGGCCCTGTAGGAGGCAGGCCTGGGGGCCGAGGGGGACCAGCCGTTCAGCAGAACA
TTCCTTCCAACCTCCTCCAGGACCATGAAAACCAGAGACTCTTTGAGCTTCTTGGCCGAAAATGCTGGAC
ACTGGCTACCACAGTTGTTCAGCTCTACCTGGCACTGCCCCCTGGAGCTGAGCACTGGACCATGGAACAC
TGCGGGGCTGTGTGCTTCGTGAAGGATAACCCTCAGAAGTCCTACTTCATCCGCCTTTATGGCCTACAGG
CTGGTCGGCTACTCTGGGAACAGGAGCTGTACTCTCAGCTGGTTTATCTCACTCCCACCCCGTTCTTCCA
CACTTTTGCTGGAGATGACTGTCAAGTAGGACTGAACTTTGCGGATGAGAGTGAAGCCCAGGCCTTCCGG
GCCTTGGTGCAGGAGAAGATACAAAAAAGGAATCAGAGGCAAAGCGGAGAAAGACGCCAGCTACCACCAC
CACCAGCACCAATCAATGAGGAGAGAAGAGGAGGGCTCCCACCTGTGCCCCCACACCCGGGTGGAGATCA
TGGGGGCCCATCAGGTGGTCCACTATCTCTAGGACTTGTGACGGTCGACATTCAGAACCCTGACATCACA
AGTTCACGATACCGTGGGCTCCCTGCACCTGGCCCTGGCCCAACTGATAAGAAACGCTCAGGGAAAAAGA
AGATCAGCAAAGCTGATATCGGAGCACCGAGTGGATTCAAACATGTCAGCCACGTGGGCTGGGATCCCCA
GAATGGATTTGATGTGAACAACCTAGACCCGGATCTGCGGAGCTTGTTCTCCAGGGCAGGAATCAGCGAG
GCCCAGCTCACTGACGCAGAGACCTCCAAGCTCATCTACGATTTTATTGAGGACCAGGGAGGTCTAGAGG
CTGTCCGGCAGGAGATGAGGCGCCAAGAGCCACTCCCACCACCTCCGCCGCCATGCAGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCCAGCCTCTGAGACCTCCTGTTGTGGGG
AGTAATAAGGGTCGCTCAGGTCCACTGCCCCCTGTACCTATGGGGGGTGCCCCACCTCCACCAACACCAC
GAGGGCCCCCACCACCAGGCCGAGGGGGTCCTCCTCCACCACCCCCTCCAGCCACTGGACGATCTGGACC
ACCACCTCCTCCACTCCCTGGAGCTGGGGGACCACCAGCACCGCCACCACCACCACCACCACCACCACCT
CCACCCTGCCCTGGGAGTGGGCCCGCCCCTCCCCCGCTCCCTCCTACTCCAGTGTCTGGGGGGAGCCCAG
CACCTGGTGGGGGCCGGGGTGCACTTTTGGACCAAATCCGGCAGGGAATTCAGCTGAACAAGACCCCTGG
AGCTCTAGAGAACTCAGTACAGCAACCACCCGCGCAGCAGTCAGAAGGCCTAGTAGGTGCCCTGATGCAT
GTCATGCAGAAGAGGAGTAGAGTCATCCATTCCTCAGATGAAGGGGAGGATCAGACCGGCGAGGATGAAG
AGGATGATGAATGGGATGACTAA

Translation (520 aa):
MNSGPGPVGGRPGGRGGPAVQQNIPSNLLQDHENQRLFELLGRKCWTLATTVVQLYLALPPGAEHWTMEH
CGAVCFVKDNPQKSYFIRLYGLQAGRLLWEQELYSQLVYLTPTPFFHTFAGDDCQVGLNFADESEAQAFR
ALVQEKIQKRNQRQSGERRQLPPPPAPINEERRGGLPPVPPHPGGDHGGPSGGPLSLGLVTVDIQNPDIT
SSRYRGLPAPGPGPTDKKRSGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISE
AQLTDAETSKLIYDFIEDQGGLEAVRQEMRRQEPLPPPPPPCRGGGGGGGGGGGGGGGGGGQPLRPPVVG
SNKGRSGPLPPVPMGGAPPPPTPRGPPPPGRGGPPPPPPPATGRSGPPPPPLPGAGGPPAPPPPPPPPPP
PPCPGSGPAPPPLPPTPVSGGSPAPGGGRGALLDQIRQGIQLNKTPGALENSVQQPPAQQSEGLVGALMH
VMQKRSRVIHSSDEGEDQTGEDEEDDEWDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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