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Report for CCDS27729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27729.1 Public Mus musculus 15 Tbc1d22a 23 108 98 CCDS HistoryNCBI Gene:223754Re-query CCDS DB by CCDS ID:27729.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063414.8 ENSMUSP00000065721.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063414.8Link to Ensembl Protein Viewer:ENSMUSP00000065721.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000063414Re-query CCDS DB by Protein ID:ENSMUSP00000065721
Original member NCBI NM_145476.2 NP_663451.2 Updated not alive Link to Nucleotide Sequence:NM_145476.2Link to Protein Sequence:NP_663451.2Re-query CCDS DB by Nucleotide ID:NM_145476Re-query CCDS DB by Protein ID:NP_663451
Current member NCBI NM_145476.3 NP_663451.2 Accepted alive Link to Nucleotide Sequence:NM_145476.3Link to Protein Sequence:NP_663451.2Re-query CCDS DB by Nucleotide ID:NM_145476Re-query CCDS DB by Protein ID:NP_663451Link to BLAST:NP_663451.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663451.2 516 Q8R5A6-1 516 100% 0 0

Chromosomal Locations for CCDS 27729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 86214575 86214636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86234730 86234786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86235516 86235853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86239117 86239293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86292134 86292204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86299647 86299775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86301546 86301608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86311727 86311841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86351654 86351763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86366605 86366680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86391077 86391204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86449192 86449287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 86496813 86496941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGGCCAGCGACGGGGCCAGGAAGCAGTTCTGGAAGCGCAGCAACAGCAAGGTCCCGGGCAGCATCCAGC
ATGTGTATGGAGCCCAGCACCCACCGTTTGATCCGCTGTTACATGGCACCTTGCTCAAGTCCACGCCCAA
GGTGCCCACCACTCCGGTGAAGGCCAAGCGGGTCAGCACCTTCCAGGAGTTTGAGAGCAACACCAGTGAT
GCTTGGGATGCCGGTGAAGACGATGATGAGCTCCTGGCCATGGCGACAGAGAGCCTGAACTCTGAGGTGG
TCATGGAGACAGCACATCGTGTCCTGCGCAATCACAGCCAGAGGCAGAGCCAGCCTTCACAGAAGACGAC
AGAACCAGAGCCAGAGCCTCAGCCCATAGCAGAGCCTCCTGTACCTCCCAGTGGTGACCTTCGCCTGGTG
AAGTCTGTCAGTGAGAGCCACACTCCTTGTCCTTCAGAGAGCACCGGTGATACAGTCCCTCTGCAACGGT
CCCAGTCTCTTCCCCACTCGGCCACAGTGACACTGAGTGGGACATCTGACCCACATGCCCTTGCTGACTC
AGCCCTGAGTAAGAGAGAGACCTCTCGGCTGGACAAGTTCAAACAGCTGCTTGCTGGCCCCAACACAGAC
CTTGAGGAATTACGGAAGCTGAGCTGGTCCGGAATCCCAAAGCCAGTTCGTCCAATGACATGGAAACTTC
TCTCAGGTTACCTTCCTGCCAATGTTGACCGAAGACCAGCCACGCTGCAGAGGAAACAGAAGGAATACTT
TGCTTTCATTGAGCATTATTACAGCTCTAGGAATGACGAAGTTCACCAGGACACGTATCGCCAGATCCAT
ATCGACATCCCTCGGATGAGCCCGGAAGCGCTGATTCTTCAGCCCAAGGTGACAGAGATTTTCGAAAGGA
TCTTGTTTATATGGGCAATCCGACACCCTGCCAGTGGATACGTTCAGGGAATAAATGACCTGGTCACTCC
GTTCTTCGTGGTCTTCATTTGCGAGTACACAGACCGGGAGGACGTGGACAAGGTCGATGTCTCCAGTGTG
CCTGCAGAGGTGCTTCGCAACATTGAGGCTGACACCTACTGGTGCATGAGCAAGCTTCTGGATGGCATTC
AGGACAACTACACCTTTGCCCAACCTGGGATTCAGATGAAAGTGAAGATGCTGGAAGAGCTTGTGAGCCG
GATTGATGAGCGAGTCCACCGGCATCTGGACGGGCATGAGGTGCGGTACCTGCAGTTTGCCTTCCGCTGG
ATGAACAACCTGCTGATGAGGGAGCTGCCCCTGCGCTGCACCATCCGCCTGTGGGACACTTACCAGTCTG
AACCCGAGGGCTTTTCTCATTTCCACTTATATGTTTGTGCTGCTTTCCTCGTGAGATGGAGGAGAGAAAT
TCTAGAAGAAAGAGATTTTCAAGAGTTGCTGCTCTTCCTCCAGAACCTGCCTACTGCCCGCTGGGATGAC
CAGGATGTCAGCCTGCTGCTGGCTGAGGCCTATCGCCTCAAGTTTGCCTTCGCAGACGCCCCCAATCACT
ACAAGAAGTGA

Translation (516 aa):
MASDGARKQFWKRSNSKVPGSIQHVYGAQHPPFDPLLHGTLLKSTPKVPTTPVKAKRVSTFQEFESNTSD
AWDAGEDDDELLAMATESLNSEVVMETAHRVLRNHSQRQSQPSQKTTEPEPEPQPIAEPPVPPSGDLRLV
KSVSESHTPCPSESTGDTVPLQRSQSLPHSATVTLSGTSDPHALADSALSKRETSRLDKFKQLLAGPNTD
LEELRKLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYSSRNDEVHQDTYRQIH
IDIPRMSPEALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYTDREDVDKVDVSSV
PAEVLRNIEADTYWCMSKLLDGIQDNYTFAQPGIQMKVKMLEELVSRIDERVHRHLDGHEVRYLQFAFRW
MNNLLMRELPLRCTIRLWDTYQSEPEGFSHFHLYVCAAFLVRWRREILEERDFQELLLFLQNLPTARWDD
QDVSLLLAEAYRLKFAFADAPNHYKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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