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Report for CCDS27715.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27715.2 Reviewed, update pending Mus musculus 15 5031439G07Rik 23 108 98 CCDS HistoryNCBI Gene:223739Re-query CCDS DB by CCDS ID:27715.2See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 27715.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047144.12 ENSMUSP00000037011.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047144.12Link to Ensembl Protein Viewer:ENSMUSP00000037011.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047144Re-query CCDS DB by Protein ID:ENSMUSP00000037011
Original member Current member NCBI NM_001033273.3 NP_001028445.2 Pending alive Link to Nucleotide Sequence:NM_001033273.3Link to Protein Sequence:NP_001028445.2Re-query CCDS DB by Nucleotide ID:NM_001033273Re-query CCDS DB by Protein ID:NP_001028445Link to BLAST:NP_001028445.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028445.2 404 Q3UE31 404 100% 0 0

Chromosomal Locations for CCDS 27715.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 84949238 84949278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84949551 84949709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84950612 84950774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84953130 84953321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84953902 84954042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84955390 84955491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84955646 84955723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84955806 84955928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84960470 84960621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 84987609 84987672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1215 nt):
ATGCTGCGCGCCATAGCCGAGGAGCGCGGACGCCTTAGCCTGCGCCGTGAGGTCTGCGGCCTGGGTTGCT
TCAAGGATGACCGCATCGTCTTCTGGACGTGGATGTTCTCTACCTACTTCATGGAGAAACTGGCTCCCCG
ACAGGATGACATGCTCTTCTACGTGCGCAGGAAGCGAGCCTACCCAGGCAACGAGGGCACCATCGATGGG
AGGAAGGCTGAGGCTGAGCCTGAGGTGGAGGTAGAAGTGTACCGGAGAGACTCTAAGAAGCTTCCGGGCC
TGGGAGATCCTGACATCGACTGGGAGGAGAGTGTCTGCCTGAACCTCATCCTGCAGAAGCTGGACTACAT
GGTGACCTGTGCTGTGTGCACGCGTGCCGATGGGGGTGACATCCACATCCACAGGAAGAAGTCCCAGCAA
GTGTTTGCCTCCCCCAGCAAACACCCCATGGACAGCAAAGGAGAAGAGTCCAAGATGAGCTACCCCAACA
TCTTCTTCATGATTGACAGCTTTGAGGAGGTGTTTAGTGACATGACCGTGGGGGAAGGAGAGATGGTCTG
CGTTGAGCTGGTCGCCAGCGACAAAACCAACACGTTCCAGGGTGTCATCTTTCAGGGCTCCATCCGATAC
GAGGCACTCAAGAAGGTGTACGACAACCGCGTGAGCGTGGCTGCTCGCATGGCCCAGAAGATGTCATTTG
GCTTCTACAAGTACAACAACATGGAGTTTGTGCGCATGAAGGGGCCTCAGGGCAAGGGCCATGCAGAGAT
GGCAGTGAGCCGAGTGTCCACCGGTGACACATCCCCCTGTGGGACCGAAGATTCAAGCCCAGCTTCGCCC
ATGCATGAGCGGGTGACCTCCTTTAGCACCCCGCCCACCCCAGAGCGAAACAACCGGCCTGCCTTCTTCT
CCCCGTCCCTTAAGAGGAAGGTGCCACGGAACCGCATCGCCGAGATGAAGAAATCACACTCAGCCAACGA
CAGCGAGGAGTTCTTCCGAGAGGACGACAGTGGAGCCGACCTGCACAATGCCACCAACCTGCGATCTCGG
TCCCTGTCTGGCACAGGACGGTCCCTGGTCGGGTCCTGGCTGAAGCTAAACCGAGCTGATGGGAACTTCC
TTCTCTATGCACACCTGACCTATGTCACTTTGCCGCTGCATCGGATCTTAACAGACATCCTGGAAGTACG
GCAGAAACCCATCTTGATGACCTAG

Translation (404 aa):
MLRAIAEERGRLSLRREVCGLGCFKDDRIVFWTWMFSTYFMEKLAPRQDDMLFYVRRKRAYPGNEGTIDG
RKAEAEPEVEVEVYRRDSKKLPGLGDPDIDWEESVCLNLILQKLDYMVTCAVCTRADGGDIHIHRKKSQQ
VFASPSKHPMDSKGEESKMSYPNIFFMIDSFEEVFSDMTVGEGEMVCVELVASDKTNTFQGVIFQGSIRY
EALKKVYDNRVSVAARMAQKMSFGFYKYNNMEFVRMKGPQGKGHAEMAVSRVSTGDTSPCGTEDSSPASP
MHERVTSFSTPPTPERNNRPAFFSPSLKRKVPRNRIAEMKKSHSANDSEEFFREDDSGADLHNATNLRSR
SLSGTGRSLVGSWLKLNRADGNFLLYAHLTYVTLPLHRILTDILEVRQKPILMT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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