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Report for CCDS27505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27505.1 Public Mus musculus 15 Cyrib 23 108 98 CCDS HistoryNCBI Gene:223601Re-query CCDS DB by CCDS ID:27505.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063838.10 ENSMUSP00000066359.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063838.10Link to Ensembl Protein Viewer:ENSMUSP00000066359.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000063838Re-query CCDS DB by Protein ID:ENSMUSP00000066359
Original member Current member EBI ENSMUST00000164532.2 ENSMUSP00000132486.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164532.2Link to Ensembl Protein Viewer:ENSMUSP00000132486.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164532Re-query CCDS DB by Protein ID:ENSMUSP00000132486
Original member Current member EBI ENSMUST00000228226.1 ENSMUSP00000154320.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228226.1Link to Ensembl Protein Viewer:ENSMUSP00000154320.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228226Re-query CCDS DB by Protein ID:ENSMUSP00000154320
Original member Current member NCBI NM_001360035.1 NP_001346964.1 Accepted alive Link to Nucleotide Sequence:NM_001360035.1Link to Protein Sequence:NP_001346964.1Re-query CCDS DB by Nucleotide ID:NM_001360035Re-query CCDS DB by Protein ID:NP_001346964Link to BLAST:NP_001346964.1
Original member Current member NCBI NM_001360036.1 NP_001346965.1 Accepted alive Link to Nucleotide Sequence:NM_001360036.1Link to Protein Sequence:NP_001346965.1Re-query CCDS DB by Nucleotide ID:NM_001360036Re-query CCDS DB by Protein ID:NP_001346965Link to BLAST:NP_001346965.1
Original member Current member NCBI NM_001360037.1 NP_001346966.1 Accepted alive Link to Nucleotide Sequence:NM_001360037.1Link to Protein Sequence:NP_001346966.1Re-query CCDS DB by Nucleotide ID:NM_001360037Re-query CCDS DB by Protein ID:NP_001346966Link to BLAST:NP_001346966.1
Original member Current member NCBI NM_144846.5 NP_659095.1 Accepted alive Link to Nucleotide Sequence:NM_144846.5Link to Protein Sequence:NP_659095.1Re-query CCDS DB by Nucleotide ID:NM_144846Re-query CCDS DB by Protein ID:NP_659095Link to BLAST:NP_659095.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346964.1 324 Q921M7 324 100% 0 0
NP_001346965.1 324 Q921M7 324 100% 0 0
NP_001346966.1 324 Q921M7 324 100% 0 0
NP_659095.1 324 Q921M7 324 100% 0 0

Chromosomal Locations for CCDS 27505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 63931616 63931679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63935579 63935649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63937298 63937424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63938664 63938743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63939645 63939761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63941931 63942008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63943184 63943320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63944323 63944428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63950006 63950127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 63956600 63956672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (975 nt):
ATGGGGAATCTTCTTAAAGTTTTGACATGCACAGACCTTGAGCAGGGGCCAAATTTTTTCCTTGATTTTG
AAAATGCCCAGCCTACAGAGTCTGAGAAGGAAATATATAATCAGGTGAATGTAGTGTTAAAAGATGCAGA
AGGCATCTTGGAGGATTTGCAGTCATACAGAGGAGCTGGCCACGAAATACGAGAGGCAATCCAGCATCCA
GCCGATGAGAAGTTGCAAGAGAAGGCGTGGGGTGCAGTCGTGCCACTAGTAGGCAAATTAAAGAAGTTTT
ACGAATTTTCTCAGAGACTAGAAGCAGCACTAAGAGGCCTTCTGGGAGCCTTGACTAGTACGCCATACTC
GCCCACCCAACATCTAGAGCGAGAGCAGGCTCTCGCTAAACAGTTTGCAGAGATTCTTCACTTCACACTC
CGGTTTGATGAGCTCAAGATGACAAATCCTGCCATACAAAATGACTTCAGCTACTACAGAAGAACATTGA
GTCGTATGAGAATTAATAATGTCCCGGCAGAAGGAGAAAATGAAGTAAATAATGAATTGGCAAATCGAAT
GTCATTGTTTTACGCTGAGGCCACCCCAATGCTGAAAACCTTAAGTGATGCAACAACAAAATTTGTATCG
GAGAATAAAAATTTGCCAATAGAAAATACCACAGATTGTTTAAGCACCATGGCAAGTGTATGCAGAGTCA
TGCTGGAGACACCGGAATACAGAAGCAGATTTACCAATGAAGAGACAGTATCATTCTGCTTGAGGGTAAT
GGTGGGTGTCATAATACTCTATGACCACGTCCATCCAGTGGGAGCATTTGCCAAAACTTCTAAGATTGAT
ATGAAAGGTTGTATCAAAGTTCTTAAGGACCAACCTCCTAATAGTGTAGAAGGTCTTCTCAATGCTCTCA
GGTACACAACAAAACATTTGAATGATGAGACTACCTCCAAGCAAATTAGGTCCATGCTGCAGTAA

Translation (324 aa):
MGNLLKVLTCTDLEQGPNFFLDFENAQPTESEKEIYNQVNVVLKDAEGILEDLQSYRGAGHEIREAIQHP
ADEKLQEKAWGAVVPLVGKLKKFYEFSQRLEAALRGLLGALTSTPYSPTQHLEREQALAKQFAEILHFTL
RFDELKMTNPAIQNDFSYYRRTLSRMRINNVPAEGENEVNNELANRMSLFYAEATPMLKTLSDATTKFVS
ENKNLPIENTTDCLSTMASVCRVMLETPEYRSRFTNEETVSFCLRVMVGVIILYDHVHPVGAFAKTSKID
MKGCIKVLKDQPPNSVEGLLNALRYTTKHLNDETTSKQIRSMLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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