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Report for CCDS27334.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27334.1 Public Mus musculus 14 Sox21 23 108 98 CCDS HistoryNCBI Gene:223227Re-query CCDS DB by CCDS ID:27334.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27334.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170662.1 ENSMUSP00000127396.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170662.1Link to Ensembl Protein Viewer:ENSMUSP00000127396.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170662Re-query CCDS DB by Protein ID:ENSMUSP00000127396
Original member Current member NCBI NM_177753.3 NP_808421.1 Accepted alive Link to Nucleotide Sequence:NM_177753.3Link to Protein Sequence:NP_808421.1Re-query CCDS DB by Nucleotide ID:NM_177753Re-query CCDS DB by Protein ID:NP_808421Link to BLAST:NP_808421.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808421.1 276 Q811W0 276 100% 0 0

Chromosomal Locations for CCDS 27334.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 118234805 118235635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGTCCAAGCCTGTGGACCACGTCAAGCGGCCCATGAACGCCTTCATGGTGTGGTCGCGGGCTCAGCGGC
GGAAGATGGCCCAGGAGAACCCTAAGATGCACAACTCGGAGATCAGCAAGCGCCTGGGCGCCGAGTGGAA
GCTGCTCACCGAGTCGGAGAAGCGGCCGTTCATCGACGAGGCGAAGCGCCTGCGAGCCATGCACATGAAG
GAGCATCCCGACTACAAGTACCGGCCGCGGCGCAAGCCCAAGACGCTGCTCAAAAAGGACAAGTTCGCCT
TCCCCGTGCCCTACGGCCTGGGCAGCGTGGCGGACGCCGAGCACCCGGCGCTCAAGGCGGGAGCCGGGCT
GCACGCGGGCGCGGGCGGCGGCCTGGTCCCCGAGTCTCTGCTCGCGAACCCCGAGAAGGCGGCCGCCGCA
GCTGCCGCCGCCGCCGCGCGCGTCTTCTTCCCGCAGTCTGCGGCCGCTGCCGCCGCCGCCGCTGCCGCCG
CCGCCGCTGGCAGCCCCTACTCACTGCTCGACCTGGGCTCCAAGATGGCAGAGATCTCGTCGTCGTCGTC
CGGCCTGCCGTACGCGTCGTCGCTGGGGTACCCCACGGCGGGTGCGGGCGCCTTCCACGGGGCGGCCGCG
GCGGCTGCTGCGGCCGCGGCGGCCGCCGGAGGGCACACGCACTCGCACCCCAGTCCCGGCAACCCCGGCT
ACATGATCCCGTGCAACTGCAGCGCGTGGCCCAGCCCGGGGCTGCAGCCGCCGCTCGCCTACATCCTGCT
GCCAGGCATGGGCAAGCCTCAGCTGGACCCCTACCCCGCGGCCTACGCTGCCGCGCTATGA

Translation (276 aa):
MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKMHNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMK
EHPDYKYRPRRKPKTLLKKDKFAFPVPYGLGSVADAEHPALKAGAGLHAGAGGGLVPESLLANPEKAAAA
AAAAAARVFFPQSAAAAAAAAAAAAAGSPYSLLDLGSKMAEISSSSSGLPYASSLGYPTAGAGAFHGAAA
AAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPYPAAYAAAL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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