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Report for CCDS21089.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21089.1 Public Mus musculus 7 Tyrobp 23 108 98 CCDS HistoryNCBI Gene:22177Re-query CCDS DB by CCDS ID:21089.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21089.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032800.9 ENSMUSP00000032800.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032800.9Link to Ensembl Protein Viewer:ENSMUSP00000032800.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032800Re-query CCDS DB by Protein ID:ENSMUSP00000032800
Original member Current member NCBI NM_011662.3 NP_035792.1 Accepted alive Link to Nucleotide Sequence:NM_011662.3Link to Protein Sequence:NP_035792.1Re-query CCDS DB by Nucleotide ID:NM_011662Re-query CCDS DB by Protein ID:NP_035792Link to BLAST:NP_035792.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035792.1 114 O54885 114 100% 0 0

Chromosomal Locations for CCDS 21089.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30413839 30413899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30414342 30414368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30414504 30414650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30415632 30415675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30417344 30417409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (345 nt):
ATGGGGGCTCTGGAGCCCTCCTGGTGCCTTCTGTTCCTTCCTGTCCTCCTGACTGTGGGAGGATTAAGTC
CCGTACAGGCCCAGAGTGACACTTTCCCAAGATGCGACTGTTCTTCCGTGAGCCCTGGTGTACTGGCTGG
GATTGTTCTGGGTGACTTGGTGTTGACTCTGCTGATTGCCCTGGCTGTGTACTCTCTGGGCCGCCTGGTC
TCCCGAGGTCAAGGGACAGCGGAAGGGACCCGGAAACAACACATTGCTGAGACTGAGTCGCCTTATCAGG
AGCTTCAGGGTCAGAGACCAGAAGTATACAGTGACCTCAACACACAGAGGCAATATTACAGATGA

Translation (114 aa):
MGALEPSWCLLFLPVLLTVGGLSPVQAQSDTFPRCDCSSVSPGVLAGIVLGDLVLTLLIALAVYSLGRLV
SRGQGTAEGTRKQHIAETESPYQELQGQRPEVYSDLNTQRQYYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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