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Report for CCDS28012.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28012.1 Public Mus musculus 16 Tssk2 23 108 98 CCDS HistoryNCBI Gene:22115Re-query CCDS DB by CCDS ID:28012.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28012.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000055374.7 ENSMUSP00000051035.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000055374.7Link to Ensembl Protein Viewer:ENSMUSP00000051035.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000055374Re-query CCDS DB by Protein ID:ENSMUSP00000051035
Original member Current member NCBI NM_009436.2 NP_033462.2 Accepted alive Link to Nucleotide Sequence:NM_009436.2Link to Protein Sequence:NP_033462.2Re-query CCDS DB by Nucleotide ID:NM_009436Re-query CCDS DB by Protein ID:NP_033462Link to BLAST:NP_033462.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033462.2 358 O54863 358 100% 0 0

Chromosomal Locations for CCDS 28012.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 17898735 17899811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGACGATGCGGCGGTCCTAAGGAAGAAGGGTTACATCGTGGGAATCAATCTGGGCAAGGGCTCCTACG
CA
AAAGTCAAATCTGCCTACTCAGAGCGCCTCAAGTTCAATGTGGCAGTCAAGATCATAGACCGCAAGAA
A
ACACCCACTGACTTTGTGGAGAGATTCCTTCCTAGGGAGATGGACATCCTGGCGACCGTCAACCACCGT
TCC
ATCATTAAGACCTACGAGATCTTTGAGACCTCTGATGGACGCATCTACATTGTCATGGAGCTGGGCG
TC
CAGGGCGACCTCCTCGAGTTCATCAAGTGCCGAGGAGCCCTGCATGAGGATGTGGCACGCAAGATGTT
C
CGCCAGCTCTCCTCAGCCGTCAAGTACTGCCACGACCTGGATGTCGTCCACCGAGACCTCAAATGTGAG
AAC
CTTCTGCTTGACAAGGACTTCAACATCAAACTGTCTGACTTCGGCTTCTCCAAGCGCTGCCTGCGGG
AC
GGGAGTGGGCGCATCGTCCTCAGCAAAACCTTCTGTGGGTCAGCAGCTTATGCAGCCCCCGAGGTGCT
G
CAGGGCATCCCCTACCAGCCCAAGGTGTATGACATCTGGAGCCTGGGTGTGATTCTCTACATCATGGTC
TGT
GGCTCCATGCCCTACGATGACTCTGACATCAAAAAGATGCTGCGCATCCAGAAGGAGCACCGAGTGG
AC
TTCCCACGCTCCAAGAACCTAACTGGTGAGTGCAAGGACCTCATCTACCGCATCCTACAGCCAGATGT
C
AACCGGCGGCTGCACATTGATGAGATCCTTAGCCACTCATGGCTACAGCCCCCCAAGCCCAAAGCCATG
TCT
TCTGCCTCCTTCAAGAGGGAGGGGGAAGGCAAGTATCGAGCTGATTGCAAGTTGGATACTCGACCAG
GC
TCCAGACCCGAACACCGGCCTGACCACAAGCTGGCGACCAAACCCCAGCAACGGATGCTGGTGACACC
C
GAGAATGAAGACAGGATGGAAGACAGGCTGGCTGAGACTTCCAGAGCTAAAGACCATCACATTTCTGGA
GCT
GAGGTGGAGAAAGCAAGTACCTAG


Translation (358 aa):
MDDAAVLRKKGYIVGINLGKGSYAKVKSAYSERLKFNVAVKIIDRKKTPTDFVERFLPREMDILATVNHR
S
IIKTYEIFETSDGRIYIVMELGVQGDLLEFIKCRGALHEDVARKMFRQLSSAVKYCHDLDVVHRDLKCE
N
LLLDKDFNIKLSDFGFSKRCLRDGSGRIVLSKTFCGSAAYAAPEVLQGIPYQPKVYDIWSLGVILYIMV
C
GSMPYDDSDIKKMLRIQKEHRVDFPRSKNLTGECKDLIYRILQPDVNRRLHIDEILSHSWLQPPKPKAM
S
SASFKREGEGKYRADCKLDTRPGSRPEHRPDHKLATKPQQRMLVTPENEDRMEDRLAETSRAKDHHISG
A
EVEKAST




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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