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Report for CCDS15956.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15956.1 Public Mus musculus 2 Traf1 23 108 98 CCDS HistoryNCBI Gene:22029Re-query CCDS DB by CCDS ID:15956.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15956.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028234.11 ENSMUSP00000028234.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028234.11Link to Ensembl Protein Viewer:ENSMUSP00000028234.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028234Re-query CCDS DB by Protein ID:ENSMUSP00000028234
Original member Current member EBI ENSMUST00000113064.7 ENSMUSP00000108687.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113064.7Link to Ensembl Protein Viewer:ENSMUSP00000108687.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113064Re-query CCDS DB by Protein ID:ENSMUSP00000108687
Original member Current member EBI ENSMUST00000172159.7 ENSMUSP00000130759.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172159.7Link to Ensembl Protein Viewer:ENSMUSP00000130759.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172159Re-query CCDS DB by Protein ID:ENSMUSP00000130759
Original member Current member NCBI NM_001326601.1 NP_001313530.1 Accepted alive Link to Nucleotide Sequence:NM_001326601.1Link to Protein Sequence:NP_001313530.1Re-query CCDS DB by Nucleotide ID:NM_001326601Re-query CCDS DB by Protein ID:NP_001313530Link to BLAST:NP_001313530.1
Original member Current member NCBI NM_009421.4 NP_033447.2 Accepted alive Link to Nucleotide Sequence:NM_009421.4Link to Protein Sequence:NP_033447.2Re-query CCDS DB by Nucleotide ID:NM_009421Re-query CCDS DB by Protein ID:NP_033447Link to BLAST:NP_033447.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001313530.1 409 P39428 409 100% 0 0
NP_033447.2 409 P39428 409 100% 0 0

Chromosomal Locations for CCDS 15956.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34943873 34944091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34945398 34945546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34946682 34946859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34948141 34948551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34949039 34949104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34956196 34956280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34957959 34958080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGGCCTCCAGCTCAGCCCCTGATGAAAACGAGTTTCAATTTGGTTGCCCCCCTGCTCCCTGCCAGGACC
CATCGGAGCCCAGAGTTCTCTGCTGCACAGCCTGTCTCTCTGAGAACCTGAGAGATGATGAGGATCGGAT
CTGTCCTAAATGCAGAGCAGACAACCTCCATCCTGTGAGCCCAGGAAGCCCTCTGACTCAGGAGAAGGTT
CACTCTGATGTAGCTGAGGCTGAAATCATGTGCCCCTTTGCAGGTGTTGGCTGTTCCTTCAAGGGGAGCC
CACAATCCATGCAGGAGCATGAGGCTACCTCCCAGTCCTCCCACCTGTACCTGCTGCTGGCGGTCTTAAA
GGAGTGGAAATCCTCACCAGGCTCCAACCTAGGGTCTGCACCCATGGCACTGGAGCGGAACCTGTCAGAG
CTGCAGCTTCAGGCAGCTGTGGAAGCGACAGGGGACCTGGAGGTAGACTGCTACCGGGCACCTTGCTGTG
AGAGCCAGGAAGAACTGGCCCTGCAGCACTTGGTGAAGGAGAAGCTGCTGGCTCAGCTGGAGGAGAAGCT
GCGTGTGTTTGCAAACATTGTTGCTGTCCTCAACAAGGAAGTGGAGGCTTCCCACCTGGCACTGGCCGCC
TCCATCCACCAGAGCCAGTTGGACCGAGAGCACATCCTGAGCTTGGAGCAGAGGGTGGTGGAATTACAGC
AAACCCTGGCTCAAAAAGACCAGGTCCTGGGCAAGCTTGAGCACAGTCTGCGACTCATGGAGGAGGCATC
CTTTGATGGTACTTTCCTGTGGAAGATCACCAATGTCACCAAGCGGTGCCACGAGTCAGTGTGTGGCCGG
ACTGTCAGCCTCTTCTCTCCAGCTTTCTACACTGCCAAGTATGGTTACAAGTTGTGCCTGCGCTTGTACC
TGAACGGGGATGGCTCAGGCAAGAAGACCCACCTGTCCCTCTTCATCGTGATCATGAGAGGAGAATACGA
TGCTCTCCTGCCCTGGCCTTTCAGGAACAAGGTCACCTTTATGCTACTTGACCAGAACAACCGAGAGCAT
GCTATTGATGCCTTCCGGCCTGACCTGAGCTCAGCCTCCTTCCAGCGGCCACAGAGTGAGACCAACGTGG
CCAGCGGCTGCCCGCTCTTCTTCCCCCTCAGCAAGCTGCAGTCACCCAAGCACGCCTACGTCAAAGATGA
CACAATGTTCCTCAAATGCATTGTGGACACTAGTGCTTAG

Translation (409 aa):
MASSSAPDENEFQFGCPPAPCQDPSEPRVLCCTACLSENLRDDEDRICPKCRADNLHPVSPGSPLTQEKV
HSDVAEAEIMCPFAGVGCSFKGSPQSMQEHEATSQSSHLYLLLAVLKEWKSSPGSNLGSAPMALERNLSE
LQLQAAVEATGDLEVDCYRAPCCESQEELALQHLVKEKLLAQLEEKLRVFANIVAVLNKEVEASHLALAA
SIHQSQLDREHILSLEQRVVELQQTLAQKDQVLGKLEHSLRLMEEASFDGTFLWKITNVTKRCHESVCGR
TVSLFSPAFYTAKYGYKLCLRLYLNGDGSGKKTHLSLFIVIMRGEYDALLPWPFRNKVTFMLLDQNNREH
AIDAFRPDLSSASFQRPQSETNVASGCPLFFPLSKLQSPKHAYVKDDTMFLKCIVDTSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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