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Report for CCDS49505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49505.1 Public Mus musculus 14 Zmym5 23 108 98 CCDS HistoryNCBI Gene:219105Re-query CCDS DB by CCDS ID:49505.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000039812.15 ENSMUSP00000043625.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000039812.15Link to Ensembl Protein Viewer:ENSMUSP00000043625.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000039812Re-query CCDS DB by Protein ID:ENSMUSP00000043625
Original member Current member EBI ENSMUST00000111285.8 ENSMUSP00000106916.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111285.8Link to Ensembl Protein Viewer:ENSMUSP00000106916.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000111285Re-query CCDS DB by Protein ID:ENSMUSP00000106916
Original member Current member EBI ENSMUST00000173954.2 ENSMUSP00000134057.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173954.2Link to Ensembl Protein Viewer:ENSMUSP00000134057.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173954Re-query CCDS DB by Protein ID:ENSMUSP00000134057
Original member Current member NCBI NM_001253752.1 NP_001240681.1 Accepted alive Link to Nucleotide Sequence:NM_001253752.1Link to Protein Sequence:NP_001240681.1Re-query CCDS DB by Nucleotide ID:NM_001253752Re-query CCDS DB by Protein ID:NP_001240681Link to BLAST:NP_001240681.1
Original member Current member NCBI NM_001253753.1 NP_001240682.1 Accepted alive Link to Nucleotide Sequence:NM_001253753.1Link to Protein Sequence:NP_001240682.1Re-query CCDS DB by Nucleotide ID:NM_001253753Re-query CCDS DB by Protein ID:NP_001240682Link to BLAST:NP_001240682.1
Original member Current member NCBI NM_144842.4 NP_659091.3 Accepted alive Link to Nucleotide Sequence:NM_144842.4Link to Protein Sequence:NP_659091.3Re-query CCDS DB by Nucleotide ID:NM_144842Re-query CCDS DB by Protein ID:NP_659091Link to BLAST:NP_659091.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001240681.1 627 Q3U2E2 627 100% 0 0
NP_001240682.1 627 Q3U2E2 627 100% 0 0
NP_659091.3 627 Q3U2E2 627 100% 0 0

Chromosomal Locations for CCDS 49505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56793766 56794500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56796604 56796810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56797668 56797830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56798910 56799192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56804149 56804239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56804415 56804819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1884 nt):
ATGGAAGCTCATCTCGCAGATATGGAATCATCTGGGGGTCCAACTAGTTCTTTAGCCGGTACATCTAGAA
ACACACATGTGGAAGATGATGATGTTGTATTTATTGAATCAGTACAGCCTCCAATTTGTGCTCCAGCAAT
ACCTAATGAAAGAAACTTTGTATTTGCTTCCTCAAAACATGAAAATCCACCAGGAACTGATTCCACAATT
TCCCCTTCTTGGAGAGATTTGACTTCTCAGAAGGGAAATCTATGTGAAACAATTGTAATTGATGATGAAG
GGGACACAGACACAAATGGAGGGGAGGAGAAAAATCCTACCGACTTTATTGAATGGGGACCGAATGGAAA
TAAAAGTAGTACCAAAAATGTGGATTTCCCCATTGCCAGTCTATCAAGAAGCAAGACCAAGACTGCAGTA
GGACCTTTTAATCCCGGTAGGATCGATGTCACGGATGCGTTTCAGAATGGAAGATTTGCAGTTCATCACA
ATCCTGATTCTTGGATCTCCCAGTCAGCATCATTTCCTCGTAACCAGAAACAACAAGGGGTGGATTCTTT
ATCACCAGTGGCCTCACTTCCTAAACAGATATTCCAGCCCTCGAACCAACAACCCACTAAACCAGTTAAA
GTCACTTGTGCAAACTGCAAAAAACCTCTACAGAAGGGGCAGACAGCTTACCAGCGAAAAGGATCAGCTC
ACCTCTTCTGTTCAACCACCTGCCTTTCTTCTTTCTCCCATAAGCGTACTCGAAAGACACGGAATGTAAT
GTGTAAAAAAGATTCTCCTGTGAGAACCACAACTATTGTTCCTCCAGTGGAGTCAAGCAAGTCCTTACAA
GGATTTTATAATGCATCGCTATCTCCCTATGAAAACTGCCAGAGTCTTAGGAAAGAAGTTTTTACTAAGT
CAAGATGTATAATCTGTAATAAATTAGGAGAGGTTCGCCATGAAATCAGTGTTAACAGTATAACACATAA
GCTGTGCAGTAATAATTGCTTTAATGAATACAGATTGACGAATGGTCTAATAATGAACTGCTGTGAACAG
TGTAGCAAGTATATGCCCAAGAGTACTGGGCACAGCATTCTGATAACAGGTCAGCAAAAGAGATTCTGCT
GCCAGAATTGTGCTGACGAATATAAAGAGATAATGGAAGCAAAATCAAAACTACTGCTTTTACAAAATAG
AAAAAGGAATGCTATCAGAGAAGAAAATGAAAAACGATTACGTGAATCATCAGGTACACTTTCAGGAAAC
ACAGGAGACATACCCGAAAAAAAGGAAAAGTCTTCAGAGATAATAAAAGTCGCAGCAGACTGTAGCCTAG
ATACATCATCAGAGGAACAAAATGTGAATTTACCTTGTTCTGTGGCAGTAATATCTGATACATTTAAAGA
GCAACTAGGAGACAAAAATTCAGAGGAATTGGATATGTCCATTTTACCTTCTTTGGATCCAGGTTCATGG
CCCCGAATTTTGAATATGAAACAACGTGAATTTCTTGTCAAAAACAATCCACCTCAAATAAGAAATTTTA
ATTTTCCAAAAGATAGTGCAGGCAAGAAGTTTTCAGAAACGTATTATACCCGAATTCTTCCAAATGGTGA
AAAGGGCACCAGACCCTGGCTGCTCTACTCAGCCTCGAAAGACTCTGTGTTTTGCCTGTATTGCAGACTC
TTTGGGGAAGGAAAAAACCAACTGAGAAATGAGAATGGGTGCAAAGATTGGCATCATTTGTCACATCTTC
TTAGTAAACATGACGAAAGTGAAATGCACATCAACAATAGTGTTAAGTATTCAAAATTAAAGTCTGACTT
GGAAAATAAAACCAATGAAGCTACAGAAGGTGGGGAAGATTGTGTGCAGCTACTGTACACATAA

Translation (627 aa):
MEAHLADMESSGGPTSSLAGTSRNTHVEDDDVVFIESVQPPICAPAIPNERNFVFASSKHENPPGTDSTI
SPSWRDLTSQKGNLCETIVIDDEGDTDTNGGEEKNPTDFIEWGPNGNKSSTKNVDFPIASLSRSKTKTAV
GPFNPGRIDVTDAFQNGRFAVHHNPDSWISQSASFPRNQKQQGVDSLSPVASLPKQIFQPSNQQPTKPVK
VTCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSFSHKRTRKTRNVMCKKDSPVRTTTIVPPVESSKSLQ
GFYNASLSPYENCQSLRKEVFTKSRCIICNKLGEVRHEISVNSITHKLCSNNCFNEYRLTNGLIMNCCEQ
CSKYMPKSTGHSILITGQQKRFCCQNCADEYKEIMEAKSKLLLLQNRKRNAIREENEKRLRESSGTLSGN
TGDIPEKKEKSSEIIKVAADCSLDTSSEEQNVNLPCSVAVISDTFKEQLGDKNSEELDMSILPSLDPGSW
PRILNMKQREFLVKNNPPQIRNFNFPKDSAGKKFSETYYTRILPNGEKGTRPWLLYSASKDSVFCLYCRL
FGEGKNQLRNENGCKDWHHLSHLLSKHDESEMHINNSVKYSKLKSDLENKTNEATEGGEDCVQLLYT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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