NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25922.1 Public Mus musculus 12 Nkx2-1 23 108 98 CCDS HistoryNCBI Gene:21869Re-query CCDS DB by CCDS ID:25922.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25922.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001536.8 ENSMUSP00000001536.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001536.8Link to Ensembl Protein Viewer:ENSMUSP00000001536.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000001536Re-query CCDS DB by Protein ID:ENSMUSP00000001536
Original member Current member EBI ENSMUST00000178477.8 ENSMUSP00000136103.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178477.8Link to Ensembl Protein Viewer:ENSMUSP00000136103.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178477Re-query CCDS DB by Protein ID:ENSMUSP00000136103
Original member NCBI NM_009385.3 NP_033411.3 Updated not alive Link to Nucleotide Sequence:NM_009385.3Link to Protein Sequence:NP_033411.3Re-query CCDS DB by Nucleotide ID:NM_009385Re-query CCDS DB by Protein ID:NP_033411
Current member NCBI NM_009385.4 NP_033411.3 Accepted alive Link to Nucleotide Sequence:NM_009385.4Link to Protein Sequence:NP_033411.3Re-query CCDS DB by Nucleotide ID:NM_009385Re-query CCDS DB by Protein ID:NP_033411Link to BLAST:NP_033411.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033411.3 372 P50220 372 100% 0 0

Chromosomal Locations for CCDS 25922.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56533035 56533780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56534688 56535060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGTCGATGAGTCCAAAGCACACGACTCCGTTCTCAGTGTCTGACATCTTGAGTCCCCTGGAGGAAAGCT
ACAAGAAAGTGGGCATGGAGGGCGGCGGCCTCGGGGCTCCGCTCGCAGCGTACAGACAGGGCCAGGCGGC
CCCACCGGCCGCGGCCATGCAGCAGCACGCCGTGGGGCACCACGGCGCCGTCACCGCCGCCTACCACATG
ACGGCGGCGGGGGTGCCCCAGCTCTCGCACTCCGCCGTGGGGGGCTACTGCAACGGCAACCTGGGCAACA
TGAGCGAGCTGCCGCCTTACCAGGACACCATGCGGAACAGCGCTTCGGGCCCCGGATGGTACGGCGCCAA
CCCAGACCCGCGCTTCCCCGCCATCTCCCGCTTCATGGGCCCGGCGAGCGGCATGAATATGAGTGGCATG
GGCGGCCTGGGCTCGCTGGGGGACGTGAGCAAGAACATGGCCCCGCTGCCCAGTGCGCCCCGCCGGAAGC
GCCGGGTGCTCTTCTCCCAGGCGCAGGTGTACGAGCTCGAGCGACGTTTCAAGCAACAGAAGTACCTGTC
GGCGCCGGAGCGCGAGCATCTGGCCAGCATGATTCACCTGACACCCACGCAGGTCAAGATCTGGTTCCAG
AACCACCGCTACAAGATGAAGCGCCAGGCTAAGGACAAGGCGGCGCAGCAACAACTGCAGCAGGACAGCG
GCGGCGGCGGAGGCGGCGGTGGCGGTGCGGGATGCCCGCAGCAGCAGCAAGCTCAGCAGCAGTCGCCGCG
CCGGGTGGCCGTGCCGGTCCTAGTCAAAGACGGCAAACCCTGCCAGGCGGGCGCCCCTGCCCCGGGAGCC
GCAAGCCTGCAAAGCCACGCGCAGCAACAAGCTCAGCAGCAGGCGCAGGCGGCGCAAGCGGCTGCCGCGG
CCATCTCAGTGGGCAGCGGTGGCGCGGGTCTAGGAGCACACCCAGGCCACCAGCCGGGCAGCGCAGGGCA
GTCCCCGGACCTGGCGCACCACGCAGCCAGCCCCGCGGGGCTGCAGGGCCAGGTCTCCAGCCTATCCCAT
CTGAACTCCTCGGGCTCGGACTATGGCGCCATGTCTTGTTCTACCTTGCTTTATGGTCGGACCTGGTGA

Translation (372 aa):
MSMSPKHTTPFSVSDILSPLEESYKKVGMEGGGLGAPLAAYRQGQAAPPAAAMQQHAVGHHGAVTAAYHM
TAAGVPQLSHSAVGGYCNGNLGNMSELPPYQDTMRNSASGPGWYGANPDPRFPAISRFMGPASGMNMSGM
GGLGSLGDVSKNMAPLPSAPRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ
NHRYKMKRQAKDKAAQQQLQQDSGGGGGGGGGAGCPQQQQAQQQSPRRVAVPVLVKDGKPCQAGAPAPGA
ASLQSHAQQQAQQQAQAAQAAAAAISVGSGGAGLGAHPGHQPGSAGQSPDLAHHAASPAGLQGQVSSLSH
LNSSGSDYGAMSCSTLLYGRTW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH