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Report for CCDS19499.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19499.1 Public Mus musculus 5 Tgfbr3 23 108 98 CCDS HistoryNCBI Gene:21814Re-query CCDS DB by CCDS ID:19499.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19499.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031224.14 ENSMUSP00000031224.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031224.14Link to Ensembl Protein Viewer:ENSMUSP00000031224.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031224Re-query CCDS DB by Protein ID:ENSMUSP00000031224
Original member Current member NCBI NM_011578.4 NP_035708.2 Accepted alive Link to Nucleotide Sequence:NM_011578.4Link to Protein Sequence:NP_035708.2Re-query CCDS DB by Nucleotide ID:NM_011578Re-query CCDS DB by Protein ID:NP_035708Link to BLAST:NP_035708.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035708.2 850 O88393 850 99.6471% 0 3

Chromosomal Locations for CCDS 19499.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 107109639 107109757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107118419 107118526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107121360 107121407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107130461 107130578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107132733 107133029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107136919 107137077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107137530 107137670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107139769 107139921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107140384 107140712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107142357 107142546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107148026 107148173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107149790 107149958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107154252 107154435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107177805 107177942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107214893 107215077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 107266194 107266260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2553 nt):
ATGGCAGTGACATCCCACCACATGGTCCCTGTGTTTGTCCTGATGAGCGCCTGCCTGGCCACCGCAGGTC
CAGAGCCCAGCACCCGGTGTGAACTGTCACCGATCAGTGCCTCTCATCCAGTCCAGGCCCTGATGGAGAG
CTTCACCGTTCTGTCTGGCTGTGCCAGCAGAGGCACCACTGGGCTGCCAAGGGAGGTTCACATCCTAAAC
CTCCGCAGTACAGACCAAGGACTAGGCCAGCCGCAGAGAGAGGTTACCCTGCATCTGAACCCCATTGCCT
CCGTGCACACTCACCACAAGCCTGTTGTGTTCCTGCTCAACTCCCCACAGCCCCTGGTGTGGCATGTGAA
GACAGAGAGACTGGCTGCTGGTGTCCCCAGACTCTTCCTGGTTTCGGAGGGTTCTGTGGTCCAGTTTTCA
TCAGGAAACTTCTCCTTGACAGCAGAAACAGAGGAAAGGAGTTTCCCTCAAGAAAATGAGCATCTGCTAC
ACTGGGCCCAAAAGGAATATGGAGCAGTGACTTCATTCACCGAACTTAAGATAGCAAGAAATATCTATAT
TAAAGTGGGAGAAGATCAAGTGTTCCCTCCCACGTGTAACATAGGGAAAAATTTTCTCTCGCTCAATTAC
CTTGCGGAGTACCTTCAACCCAAAGCCGCCGAAGGTTGTGTCCTGGCCAGTCAGCCCCACGAGAAGGAAG
TGCATATCATTGAGTTAATCTCCCCCAACTCCAATCCTTACAGCACCTTCCAGGTGGATATAATAATTGA
CATACGACCTGCTCGAGAGGATCCTGAGGTGGTCAAAAACCTCGTCCTGATCTTGAAGTGCAAAAAATCT
GTCAACTGGGTGATCAAGTCTTTTGACGTCAAGGGAAACTTGAAAGTTATTGCTCCTGACAGTATTGGCT
TTGGAAAAGAGAGTGAACGATCCATGACAGTGACCAAATTGGTAAGAAATGACATCCCTTCCACCCAAGA
GAATCTGATGAAGTGGGCATTGGACAATGGCTACAGCCCAGTGACGTCATACACCATAGCTCCTGTGGCC
AATAGATTTCATCTTCGGCTTGAGAACAACGAGGAGATGAGAGATGAGGAAGTCCACACCATTCCTCCTG
AGCTTCGGATCCTGCTGGGCCCTGACCACCTGCCTGCCCTGGACAGCCCATCCTTCCAAGGGGAAATCCC
AAATGGAGGTTTCCCCTTCCCATTCCCGGATATCCCCAGGAGAGGCTGGAAGGAGGGAGAAGATAGGATC
CCCCGGCCAAAGGAACCCATCATTCCCAGAGTTCAATTGCTTCCAGACCACAGAGAGCCAGAAGAAGTGC
AAGGGGGCGTGAATATCGCCCTGTCAGTCAAATGTGACAATGAAAAGATGGTGGTAGCTGTAGACAAAGA
TTCTTTCCAGACCAATGGCTACTCGGGGATGGAGCTCACCCTGTTGGATCCTTCCTGCAAAGCCAAGATG
AATGGTACCCACTTTGTACTGGAGTCTCCGCTGAATGGCTGTGGTACTAGACATAGGAGGTCAGCCCCAG
ATGGTGTGGTTTACTATAACTCTATTGTGGTGCAGGCTCCATCCCCTGGGGATAGCAGTGGCTGGCCAGA
CGGCTACGAAGATTTGGAGTCGGGTGATAATGGATTTCCTGGAGACACAGATGAAGGAGAAACTGCCCCC
CTGAGCCGTGCTGGAGTGGTAGTGTTTAACTGCAGCTTGCGGCAGCTGAGGAGTCCCAGTGGCTTCCAGG
ACCAGCTCGATGGAAATGCTACCTTCAACATGGAGCTGTATAACACAGACCTCTTTCTGGTGCCCTCCCC
AGGGGTCTTCTCTGTGGCAGAGAATGAGCATGTATATGTTGAGGTGTCTGTCACTAAGGCTGACCAAGAT
CTGGGATTTGCCATCCAAACCTGCTTTATCTCTCCATACTCAAACCCAGACAGAATGTCTGATTACACCA
TCATCGAGAACATCTGTCCGAAGGATGACTCTGTGAAGTTCTACAGCTCCAAGAGAGTGCACTTCCCCAT
CCCACATGCTGAAGTGGACAAGAAGCGGTTCAGCTTTGTGTTCAAGTCCGTGTTCAACACCTCCCTGCTC
TTCCTGCACTGCGAGCTGACGCTGTGCTCTAGGAAGAAGGGCTCCCAGAAGCTGCCAAAGTGTGTGACTC
CTGACGACGCCTGCACCTCTCTAGATGCCACCATGATCTGGACCATGATGCAGAATAAGAAGACATTCAC
CAAGCCCCTGGCCGTGGTCCTCCAAGTAGATTATAAAGAAAATGTTCCAAACATGAAGGAGTCCAGTCCG
GTTCCTCCTCCTCCACAGATTTTCCACGGCCTGGACACGCTCACCGTGATGGGCATTGCGTTTGCAGCAT
TTGTGATCGGAGCACTCCTGACGGGGGCCTTGTGGTATATCTACTCCCACACAGGGGAGACGGCACGAAG
GCAGCAAGTCCCTACCTCGCCACCAGCCTCGGAGAACAGCAGCGCAGCCCACAGCATAGGGAGCACTCAG
AGCACTCCCTGCTCTAGCAGCAGCACGGCCTAG

Translation (850 aa):
MAVTSHHMVPVFVLMSACLATAGPEPSTRCELSPISASHPVQALMESFTVLSGCASRGTTGLPREVHILN
LRSTDQGLGQPQREVTLHLNPIASVHTHHKPVVFLLNSPQPLVWHVKTERLAAGVPRLFLVSEGSVVQFS
SGNFSLTAETEERSFPQENEHLLHWAQKEYGAVTSFTELKIARNIYIKVGEDQVFPPTCNIGKNFLSLNY
LAEYLQPKAAEGCVLASQPHEKEVHIIELISPNSNPYSTFQVDIIIDIRPAREDPEVVKNLVLILKCKKS
VNWVIKSFDVKGNLKVIAPDSIGFGKESERSMTVTKLVRNDIPSTQENLMKWALDNGYSPVTSYTIAPVA
NRFHLRLENNEEMRDEEVHTIPPELRILLGPDHLPALDSPSFQGEIPNGGFPFPFPDIPRRGWKEGEDRI
PRPKEPIIPRVQLLPDHREPEEVQGGVNIALSVKCDNEKMVVAVDKDSFQTNGYSGMELTLLDPSCKAKM
NGTHFVLESPLNGCGTRHRRSAPDGVVYYNSIVVQAPSPGDSSGWPDGYEDLESGDNGFPGDTDEGETAP
LSRAGVVVFNCSLRQLRSPSGFQDQLDGNATFNMELYNTDLFLVPSPGVFSVAENEHVYVEVSVTKADQD
LGFAIQTCFISPYSNPDRMSDYTIIENICPKDDSVKFYSSKRVHFPIPHAEVDKKRFSFVFKSVFNTSLL
FLHCELTLCSRKKGSQKLPKCVTPDDACTSLDATMIWTMMQNKKTFTKPLAVVLQVDYKENVPNMKESSP
VPPPPQIFHGLDTLTVMGIAFAAFVIGALLTGALWYIYSHTGETARRQQVPTSPPASENSSAAHSIGSTQ
STPCSSSSTA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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