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Report for CCDS26426.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
26426.1 Public Mus musculus 13 Gmds 23 108 98 CCDS HistoryNCBI Gene:218138Re-query CCDS DB by CCDS ID:26426.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 26426.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041859.8 ENSMUSP00000036696.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041859.8Link to Ensembl Protein Viewer:ENSMUSP00000036696.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000041859Re-query CCDS DB by Protein ID:ENSMUSP00000036696
Original member Current member NCBI NM_146041.2 NP_666153.1 Accepted alive Link to Nucleotide Sequence:NM_146041.2Link to Protein Sequence:NP_666153.1Re-query CCDS DB by Nucleotide ID:NM_146041Re-query CCDS DB by Protein ID:NP_666153Link to BLAST:NP_666153.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666153.1 372 Q8K0C9 372 100% 0 0

Chromosomal Locations for CCDS 26426.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 31819916 31819978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 31820142 31820210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 31917620 31917716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 31940484 31940602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32100357 32100484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32127000 32127104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32127907 32128099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32225135 32225244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32227215 32227302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32234353 32234397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32338382 32338483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCTCAAGCTCCCGCTAAGTGCCCGAGCTACCCGGGCTCCGGGGATGGCGAGATGGGCAAGCTCAGGA
AGGTGGCTCTCATCACTGGCATCACCGGACAGGATGGTTCGTACTTGGCAGAATTCCTGTTGGAGAAAGG
GTACGAGGTCCATGGAATAGTACGGCGATCTAGTTCATTTAATACAGGTCGAATTGAACATTTATATAAG
AATCCTCAGGCTCATATTGAAGGAAACATGAAGTTGCACTATGGTGACCTCACTGACAGCACCTGCCTAG
TGAAAATCATCAATGAAGTCAAGCCTACAGAGATCTATAATCTTGGAGCCCAGAGCCATGTCAAGATCTC
CTTTGACTTAGCTGAGTACACCGCAGATGTTGATGGCGTTGGCACCTTGCGGCTTCTGGATGCAATTAAA
ACTTGTGGCCTTATAAATTCTGTGAAGTTCTACCAGGCCTCAACAAGTGAACTTTATGGAAAAGTGCAGG
AAATACCCCAGAAGGAGACCACACCTTTCTATCCGAGGTCACCCTATGGAGCAGCCAAACTCTATGCCTA
TTGGATTGTGGTGAATTTCCGTGAAGCTTATAATCTCTTTGCAGTGAATGGAATTCTCTTCAATCATGAG
AGTCCCAGAAGAGGAGCTAATTTTGTTACTCGAAAAATTAGCCGGTCAGTAGCTAAGATTTACCTTGGAC
AACTGGAATGTTTCAGCTTGGGAAATCTGGATGCCAAACGAGACTGGGGCCATGCCAAGGACTATGTAGA
GGCTATGTGGCTCATGTTGCAGAATGATGAGCCAGAGGACTTTGTCATAGCTACTGGGGAAGTTCACAGT
GTCCGTGAATTTGTTGAAAAGTCATTCATGCACATCGGAAAAACCATTGTGTGGGAAGGAAAGAATGAAA
ATGAAGTGGGCAGATGTAAAGAGACCGGCAAAGTTCACGTGACTGTGGATCTGAAATACTACCGACCGAC
TGAAGTGGACTTTCTGCAGGGAGACTGCTCCAAGGCTCAGCAGAAGCTAAACTGGAAGCCCCGCGTTGCC
TTTGACGAGCTGGTGAGGGAGATGGTGCAGGCCGACGTGGAGCTCATGAGGACCAACCCCAACGCTTGA

Translation (372 aa):
MAQAPAKCPSYPGSGDGEMGKLRKVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYK
NPQAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAIK
TCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHE
SPRRGANFVTRKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHS
VREFVEKSFMHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCSKAQQKLNWKPRVA
FDELVREMVQADVELMRTNPNA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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