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Report for CCDS70414.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70414.1 Public Mus musculus 12 Nrde2 23 108 98 CCDS HistoryNCBI Gene:217827Re-query CCDS DB by CCDS ID:70414.1See the combined annotation on chromosome 12 in Sequence Viewer

Public Note for CCDS 70414.1
The exon combination of this CCDS representation is inferred due to a lack of full-length transcript support for this gene. It is supported by tiled partial transcript alignments.

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 70414.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021596.8 ENSMUSP00000021596.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021596.8Link to Ensembl Protein Viewer:ENSMUSP00000021596.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000021596Re-query CCDS DB by Protein ID:ENSMUSP00000021596
Original member Current member NCBI NM_001290303.1 NP_001277232.1 Accepted alive Link to Nucleotide Sequence:NM_001290303.1Link to Protein Sequence:NP_001277232.1Re-query CCDS DB by Nucleotide ID:NM_001290303Re-query CCDS DB by Protein ID:NP_001277232Link to BLAST:NP_001277232.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277232.1 1172 Q80XC6 1172 100% 0 0

Chromosomal Locations for CCDS 70414.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100125606 100125731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100126201 100126272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100129295 100129433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100130358 100131283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100132151 100132537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100134357 100134532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100137658 100137778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100140005 100140138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100141893 100142298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100143739 100144189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100145870 100146028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100149817 100150050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100151211 100151334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100159540 100159603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3519 nt):
ATGGCGCTGTTCCCGGCTTTTGCGGACGTAAGTGAGGCCTCCGGTGATGGGGCATTCAGGAAAGAGTTAG
ATTGGCTGAGCAACCCAAGCTTTCGTGTTGGAAATCTAACTTCTCTGAGCCGACAAACTGAAGAGGTCAC
AGCCCTTGCTTCTGAAGGGTCACCACCGCCAAGGTACTCTTTTATCAGGAGTCCTCTGAAGTCAGAGCTC
TCAGGTGAGAGCAACACTAGCGAGAAGCTCGCACAGACAAGCAGGAAGAAGAAGAAGGAGAAAAAGAAGA
GACGGAAGCATCAGCACCACAGGAAAACCAAGAGGAGGCACGAGCAGTTGAGCAGCAGCGGCTCTGAGTC
AGACACAGAGGCTGGGAAGGACAGGGCTTCCCGGAGCATCAGGGACGACCAGAAGGAAGCCGAGAAACCC
TGTCAGGGAAGCAATGCGGCTGCTGCTGTTGCTGCTGCTGCTGGACATCGGTCCATTTGGCTGGAAGATA
TTCACGATCTGACCGACGTCTTCAGGACTGATAAGAAGCCAGATCCTGCCAACTGGGAGTATAAATCTCT
GTATCGTGGGGATATAGCAAGGTACAAGAGGAAGGGAGACTCCTGCCTGGGTATCAATCCTAAGAAACAG
TGTATATCTTGGGAAGGGGCTTCTGCAGCAAAGAAGCACTCACACAGGCACCTGGAGCGCTATTTTACCA
AGAAGAATGTGGGGTTAATGAGAACAGAGGGCATTGCTGTGTGCAGTAACCCCGAGCCTGCCTCCTCCGA
GCCCGTCACATTCATCCCAGTGAAGGACTCTGCTGAGGCAGCTACTCCTGTTACATCATGGCTGAATCCT
CTGGGGATTTATGATCAGTCTACCACACAGTGGTTACAAGGACAGGGTCCAGCAGAGCAAGAGTCAAAGC
AGCCGGACTCGCAACAGGACAGGGAGAATGCTGCTCTCAAGGCCAGAGTGGAAGAGTTTAACAGAAGGGT
TCGGGAGAATCCTTGGGACACGCAACTATGGATGGCGTTTGTGGCTTTCCAGGACGAGGTCATGAGGAGT
CCTGGCATCTATGCCCTTGGGGAAGGAGAACAGGAGAAGCACAGGAAGTCCCTGAAGCTCCTCCTGGAGA
AGAAGCTGGCTGTGCTGGAGCGGGCCATCGAGAGCAACCCAGGCAGCGTGGAGCTGAAGCTTGCCAAGCT
GCAGCTGTGCTCAGAGTTCTGGGAGCCCAGTGCGCTGGCCAAGGAGTGGCAGAAGCTCCTCTTCCTGCAC
CCCAACAACACAAGCCTGTGGCAGCGCTATCTCTCCTTTTGCCAGAGCCAGTTTGGTACCTTTTCTGTGT
CCAAACTCCACAGTCTGTATGGCAAGTGCTTGAGTACCTTGTCTGCTGTTAAAGATGGCAGCATGCTATC
CCACCCTGTGTTGCCGGGCACCGAGGAGGCCATGTTTGGGCTCTTTCTTCAGCAGTGCCACTTTCTACGG
CAGGCTGGCCACTCAGAGAAGGTCATCTCTTTGTTCCAGGCCATGGTTGACTTCACCTTCTTCAAGCCTG
ACAGTGTGAAAGAGCTGCCTACTAAAGTACAGGTGGAATTCTTTGAGCCCTTCTGGGACAGCGGAGAACC
ACGCGTTGGGGAGAAGGGAGCCCGAGGCTGGCGGGCGTGGATGCACCAACAGGAGCGAGGTGGCTGGGTG
CTCATCACCCCAGATGAGGATGACGAGGAGCCCGAAGAGGAGGACCAGGAGATAAAAGACAAGACCCTGC
CCCGGTGGCAGATCTGGCTTGCTGTTGAGCGTTCTCGAGACCAGAGGCACTGGCGTCCCTGGCGCCCTGA
TAAGACCAAGAAGCAAACGGAGGAAGACTGTGAGGACCCTGAGAGACAGGTGCTGTTTGATGACATTGGG
CAATCTTTGATCAGACTTTCCAGCCCAGACCTTCAGTTCCAGCTCATCCAGGCCTTTCTGCAGTTCCTGG
GCGTGCCTTCCGGCTTCCTGCCCCCAGCCTCCTGCCTTTACCTGGCCATGGACGAGAGCAGCATCTTTGA
GAGTGAACTTTATGATGAAAAGCCCCTGACTTACTTCAACCCTTCCTTTTCGGGCATTAGCTGTGTCGGC
TCCATGGAACAGTTGGGTCGCCCTCGCTGGACCAAAGGTCACAACCGAGAGGGCGAGGAGTTTGTCCGCA
ATGTCTTCCACCTGGTGCTGCCTTTGCTCGCAGGCAAGCAGAAGTCCCAGCTCAGCCTCTCCTGGTTACG
GTACGAGATTGCAAAGGTCATTTGGTGTCTACACACTAAAAAGAAGCGATTGAAGTCTCAGGGAAAGAGC
TGCAAAAAACTAGCCAAGAATCTCCTCAAGGAGCCAGAAAACCGCAACAACTTCTGCCTCTGGAAGCAGT
ATGCACACCTGGAGTGGTTGCTCGGTAACACAGAGGATGCCAGAAAAGTGTTCGACACAGCACTCAGCAT
GGCAGGCAGCAGCGAGCTGAAGGACCGTGAACTCTGCGAGCTCAGTCTGCTCTATGCCGAGCTGGAGATG
GAACTGTCGCCGGACTCGAGAGGAGCCACCACAGGCCGAGCGGTCCACATATTAACACGGCTGACGGAGA
GCAGTCCCTACGGGCCCTACACGGGGCAGGTCTCGTCCACCCAGGTGCTGAAAGCTCGGAAGGCTTACGA
GCTCGCGCTGCAGGACTGCCTGGGCCAGAGCTGTGCCTCCAGCCCAGCTCCTGCAGAGGCCTTGGACTGC
CTGGGTAGCTTGGTCCGATGCTTTATGCTCTTCCAGTATTTGACTGTGGGCATTGATGCTGCTGTGCAGA
TATACGGAAGGGTGTTTGCCAAGCTGAAGGGCTCTGCTCGCTTAGAAGACCCAGGGCCAGAGGACAGCAC
CAGCTCCCAGAGTTTGACCAATGTGCTCGAGGCTGTCAGCATGATGCACACAAGCCTGCTGCGATTCCAC
ATGAACGTTTGTGTTTACCCTCTGGCTCCACTCCGAGAGACCCTCTCCGATGCTTTAAAGCTGTATCCGG
GCAACCAGGTTCTTTGGAGGGCTTATGTACAGATTCAGAATAAGTCCCACAGTGCTAACAAGACCAGAAG
GTTCTTTGACACAGTTACTAGGTCTGCCAAACATTTGGAGCCTTGGCTATTTGCAATCGAAGCTGAGAAG
CTGAGGAAAAAGCTAGTGGAATCTGTTCAGAGGGTAGGAGGCAGAGAGGTCCATGCAACAATCCCCGAGA
CTGGCCTTACGCATCGCATCAGAGCTTTGTTTGAAAATGCGATTCGGAGCGACAAGGGCAACCAGTGTCC
CCTACTGTGGAGGATGTATTTGAATTTTTTGGTTTCCTTAGGAAACAAAGAAAGAAGCAAAGGCGTGTTC
TACAAGGCCCTCCAGAGCTGTCCTTGGGCAAAGGTGCTATACATGGACGCCATGGAGTATTTCCCAGACG
AGCTGCAGGAGATCCTGGACGTGATGACCGAGAAGGAGCTCCGTGTGCGCCTGCCCCTTGAGGAGCTGGA
GCTGCTGCTGGAGGATTAG

Translation (1172 aa):
MALFPAFADVSEASGDGAFRKELDWLSNPSFRVGNLTSLSRQTEEVTALASEGSPPPRYSFIRSPLKSEL
SGESNTSEKLAQTSRKKKKEKKKRRKHQHHRKTKRRHEQLSSSGSESDTEAGKDRASRSIRDDQKEAEKP
CQGSNAAAAVAAAAGHRSIWLEDIHDLTDVFRTDKKPDPANWEYKSLYRGDIARYKRKGDSCLGINPKKQ
CISWEGASAAKKHSHRHLERYFTKKNVGLMRTEGIAVCSNPEPASSEPVTFIPVKDSAEAATPVTSWLNP
LGIYDQSTTQWLQGQGPAEQESKQPDSQQDRENAALKARVEEFNRRVRENPWDTQLWMAFVAFQDEVMRS
PGIYALGEGEQEKHRKSLKLLLEKKLAVLERAIESNPGSVELKLAKLQLCSEFWEPSALAKEWQKLLFLH
PNNTSLWQRYLSFCQSQFGTFSVSKLHSLYGKCLSTLSAVKDGSMLSHPVLPGTEEAMFGLFLQQCHFLR
QAGHSEKVISLFQAMVDFTFFKPDSVKELPTKVQVEFFEPFWDSGEPRVGEKGARGWRAWMHQQERGGWV
LITPDEDDEEPEEEDQEIKDKTLPRWQIWLAVERSRDQRHWRPWRPDKTKKQTEEDCEDPERQVLFDDIG
QSLIRLSSPDLQFQLIQAFLQFLGVPSGFLPPASCLYLAMDESSIFESELYDEKPLTYFNPSFSGISCVG
SMEQLGRPRWTKGHNREGEEFVRNVFHLVLPLLAGKQKSQLSLSWLRYEIAKVIWCLHTKKKRLKSQGKS
CKKLAKNLLKEPENRNNFCLWKQYAHLEWLLGNTEDARKVFDTALSMAGSSELKDRELCELSLLYAELEM
ELSPDSRGATTGRAVHILTRLTESSPYGPYTGQVSSTQVLKARKAYELALQDCLGQSCASSPAPAEALDC
LGSLVRCFMLFQYLTVGIDAAVQIYGRVFAKLKGSARLEDPGPEDSTSSQSLTNVLEAVSMMHTSLLRFH
MNVCVYPLAPLRETLSDALKLYPGNQVLWRAYVQIQNKSHSANKTRRFFDTVTRSAKHLEPWLFAIEAEK
LRKKLVESVQRVGGREVHATIPETGLTHRIRALFENAIRSDKGNQCPLLWRMYLNFLVSLGNKERSKGVF
YKALQSCPWAKVLYMDAMEYFPDELQEILDVMTEKELRVRLPLEELELLLED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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