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Report for CCDS56838.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56838.1 Public Mus musculus 12 Baz1a 23 108 98 CCDS HistoryNCBI Gene:217578Re-query CCDS DB by CCDS ID:56838.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56838.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000173433.7 ENSMUSP00000133478.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173433.7Link to Ensembl Protein Viewer:ENSMUSP00000133478.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000173433Re-query CCDS DB by Protein ID:ENSMUSP00000133478
Original member Current member NCBI NM_013815.2 NP_038843.2 Accepted alive Link to Nucleotide Sequence:NM_013815.2Link to Protein Sequence:NP_038843.2Re-query CCDS DB by Nucleotide ID:NM_013815Re-query CCDS DB by Protein ID:NP_038843Link to BLAST:NP_038843.2

Chromosomal Locations for CCDS 56838.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 54894305 54894501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54894958 54895045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54896030 54896172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54898338 54898798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54900000 54900226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54900311 54900558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54908999 54909147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54911310 54911461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54912577 54912740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54916468 54917067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54918438 54918562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54921038 54921145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54922443 54922608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54923040 54923264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54923385 54923480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54927564 54927710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54929527 54929665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54930252 54930347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54934740 54934906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54935482 54935581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54941502 54941636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54943977 54944064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54946802 54946903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54954698 54954841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54975104 54975382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 54985666 54985778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4659 nt):
ATGCCGCTGCTTCACCGAAAGCCTTTCGTGAGGCAGAAGCCGCCGGGGGACCTGCGGCCGGACGAGGAAG
TTTTCTACTGTAAAGTCACCAACGAGATCTTCCGCCACTACGATGACTTTTTTGAACGAACCATTCTGTG
CAACAGCCTTGTGTGGAGCTGTGCCGTGACGGGTAGACCTGGACTGACGTATCAGGAAGCTCTTGAATCC
GAAAGAAAAGCAAGACAGAACCTCCAGAGTTTTCCAGAACCACTAATTATTCCCGTTTTATACCTGACCA
ACCTTACTCGTCGTTCACGCTTGCATGAAATCTGTGATGATATCTTTGCCTATGTCAAGGACCGATATTT
TGTTGAAGAGACTGTGGAAGTCATTCGGAACAATGGCACAAGGCTGCAGTGTAGAATCTTGGAAGTCCTC
CCTCCATTACATCAGAATGGTTTTGCTAACGGACACCTGAGCAGTGCTGATGGAGAGACGATTGTCATCA
GCGACAGTGACGACTCGGAAACACAAAGCAGCTCTTTTCACCATGGGAAGAAGAAAGATGCAATCGATCC
CTTATTATTCAGATACAGGGTTCAGCCCACTAAAAAGGAGATGTATGAGTCTGCTGTTGTTAAAGCAACA
CAAATCAGCCGGAGAAAACATCTATTTTCTCGTGATAAACTAAAGCTTTTTCTCAAGCAACACTGTGAAG
CACAAGATGGAGTCATTAAAATTAAGGCATCATCATTTTCAGCATATAACATAGCAGAGCAGGACTTCTC
TTATTTCTTCCCTGATGACCCACCTACTTTCATCTTCAGTCCTGCTAACAGGCGACGAGGAAGACCTCCC
AAACGAATATCTTTTGGTCAGGAAGACAGCATTGCTAGTAAGCAGACTGCTGCAAGATATCGGAACAAAG
CTATTAAAGAAAGAGACAAACTTCTGAAACAGGAAGAAATGAGGGCACTGGCTTTCGAAAAGGCTAAACT
AAAACGAGAAAGAGCGGATGCTTTGGAAGCAAGAAAAAGAGAAAAGGAGGATAAAGAGAAAAAAAGGGAG
GAACTGAAGAAAATGGTAGAGGAAGAGCGACTAAAGAAAAAAGAAGAAAAAGAGAGACTTAAAATAGAAA
GAGAAAAGGAAAGAGAAAAATTACGTGAAGAAAAGCGAAAATATATGGAATACTTAAAGCAGTGGAGTAA
ACCCAGAGAAGATATGGAATGTGATGACCTTAAGGAACTTCCAGAGCCCACGCCAGTGAAAACTAGACTC
CCTCCTGAAGTCTTCGGCGATGCGCTGATGGTTCTGGAGTTCCTTAATGCATTTGGGGAACTTTTTGACC
TTCAAGATGAGTTTCCTGAGGGAGTAACCTTAGAAGTGTTAGAGGAAGCTCTTGTAGGAAATGACAGTGA
AGGCCCACTGTGTGAATTGCTTTTTTTCTTCCTGACTGCAATCTTCCAGGCGATGGCTGAAGAAGAGGAG
GAAGTAGCCAAAGAGCAGATAACTGATGCTGACACCAAAGATCTAACAGAGGCTTTGGATGAGGACGCAG
ACCCCACAAAATCTGCACTGTCTGCAGTTGCAGCCTTGGCCGCTGCATGGCCACAGTTACACCAGGGCTG
CAGTTTGAAAAGCTTGGATCTTGATAGCTGCACTCTTTCTGAAATCCTCAGACTGCACATCTTAGCCTCA
GGTGCTGATGTGACATCAGCAAATGCAAAGTACAGGTATCAGAAACGAGGAGGATTCGACGCTACGGACG
ATGCCTGCATGGAGCTTCGGCTGAGCAATCCCAGTCTGGTGAAAAAATTGTCCAGCACTTCTGTATATGA
TTTGACACCAGGAGAAAAAATGAAGATACTCCATGCTCTCTGTGGGAAGCTACTGACCCTAGTTTCTACT
AGGGATTTCATTGAAGATTATGTTGATGTGTTGCGACAGGCCAAGCAGGAGTTCCGAGAGCTCAAAGCAG
AACAGCACCGTAAAGAGAGAGAAGCCACAGCTGCTCGAATACGTAGAAGGAAGGAAGAAAAACTTAAGGA
ACAAGAACAGAAAATGAAAGAGAAACAAGAAAAACTGAAGGAGGACGAGCAGAGAAATTCAGCTGCAGTT
CCAGGGGAAGAAGAAAGGGAAGATTTTGATACTAGTACTGAGAACAAAAACATAGAGCAGAAAGATCTGG
ACCCTGATGTGGTTACTGAAGATGAAGATGACCCCGGATCGCATAAAAGGAGCAGAAGAGGGAAAGTGGG
ACAAACTGCAGTTAAGCAATGTATAAAGCAAGAAGAGATGAACTACTGTATAAAGCAGGAGCCTCTGAGT
GCCGACGCAGAGGAAGCTTTGAGGCAGGAGCAGCAGCAGAAAGAGAAAGAACTCCTAGACAAGATTCAGA
GTGCCATCGCCTGTACTAACATCTTCCCTCTGGGGCGCGACCGCCTGTACAGGCGCTACTGGATCTTTCC
TTCCATTCCTGGTCTGTTCATAGAAGAGGATTATTCAGGTCTTACTGAAGACATGTTGCTGCCTAGGCCT
TCATCATTTCACAATAACGCACAGCCTCGCGATCCTCAGGTATCTATTAAAACTGAAGAGTCCTTCCTGT
CTGAATCTACCTCCAGCCTCGACCAAGGTCCGTTCGATGACTCTGTGCTGCTGCCAAAACCGGTGCATAA
GCCAAATCGGTGGTGCTTTTACAGTTCTTGTGCACAGCTGGACCAGCTCATTGACGCTCTCAACTCCAGA
GGACACCGAGAAAGCGCCTTGAAAGAGACCTTGCTACAGGAGAAGAGCAGAATATGCGCACAGCTTGCCC
ACTTCTCTGAAGAGAAATTCCATTTTTCAGACAAACCTCAGGCTGATAGCAAGCCTGTGTCTTCTCGGGG
ACGATCTTCTGGTGCATGTGACATATCCCAGATGTCTGCAGAGAGGCAGCTGGAGCTGAGGCTCAGAGAC
TTTCTCTTGGATATTGAGGACAGAATCTATCAAGGGACACTAGGAGCCATCAAGGTTACAGACCGACAGG
TCTGGAGATCAGCCCTGGAGAATGGGCGATACGAGCTGTTAAGTGAGGAGAGCAAGGAAAATGGAGTGAT
TAAAACTGTGAATGAGGATGTGGAAGAGATGGAAATGGAACAAGCAAGGGTCATAGTAAGAGACAGACTT
TTGGGGATTAAAACCGAAACTCCAAGTACCATCTCAACCAGTGCCAGTACACCACAGTCAGTGAGCAATG
TGGTTCATTATCTGGCCCTGGCCCTCTTTCAGATAGAACAGGGCATTGAACGGCGTTTCCTCAAAGCTCC
CCTTGATGGCAATGACAGCGGACGTTCTTATAAAACCGTCCTGGACCGTTGGAGGGAGTCTCTCCTTTCC
TCTGCTAGTCTTTCCCAAGTGTTTCTGCATTTATCAACCTTGGATCGCAGTGTGATGTGGTCTAAGTCCA
TACTGAACGCACGTTGCAAGATCTGCCGGAAAAAGGGGGATGCTGAAAACATGGTGCTGTGTGACGGCTG
CGACCGAGGGCATCACACCTACTGCGTCCGACCAAAGCTCAAGGCTGTTCCTGATGGAGACTGGTTTTGT
CCAGAATGTCGACCAAAGCAACGTTCTAGAAGACTTTCCTCTAGGCAGAGACCATCCTTGGAAAGTGATG
AAGAAATGGAAGAGGGTATGGAAGATGATGATGATGAAGTTGACGATGATGATGAAGAGGGTCAAAGTGA
GGAGGAAGAATATGAGGTGGAGCAAGATGAGGAGGACTCTGACGACGACGAAGCGCTCAGCCCACCAAAA
CGAGGAAGACCCCAAGTTAGATTGCCAATTAAAACAAAAGGGAGATTTGGCCCTTCTTTCCCAAGTCGCA
GCCAACGACAAGACCCTGGAAGATACCCTTCAAGGAGCCAGCAGAGCACGCCCAAAAACACTGCTAAATC
TGCTAGCAAAAACCTGAGGAAAACAAGATCTGCTCCTCCCACAGAAACTCGATCCCTAAGAGTTGGTAGT
CGCTCCACTCGCCACAGTCCGAGTGCACTGCAAGATGTGTTTGTGGAACTGCTTAGTCCTCACAGCAAAC
GCAGAGGACGGAAGGGTGCTGATCATACCCCAGAGCACAGTCCCAGCTTCACCAACTTCAGGGTCAGCAC
CTCGAGATCAAGCAGGCAGTTGATTCCTTTAAATACTGCTGAAAGTCTCTCTCTCCAGCATAGTGAATCT
AAGAGAAGAGGCAGGAAAAGACAATCTACAGAGTCATCTCCTGTACCACTGAATCGAAGAAGTTCTGGCA
GGCAAGGAGGTGTCCATGAACTGTCTGCTTTTGAACAACTTGTCGTGGAACTGGTACGGCATGATGATAG
CTGGCCCTTTTTGAAACTGGTTTCTAAAATCCAGGTCCCAGACTACTATGACATCATTAAGAAGCCCATT
GCCTTAAATATAATTCGAGAAAAAGTAAATAAATGTGAATATAAATTAGCATCTGAGTTTATTGATGATA
TTGAGTTAATGTTTTCAAACTGCTTTGAATACAACCCTCGGAACACAAGTGAAGCAAAAGCTGGAACTCG
GCTTCAAGCATTTTTTCATATTCAAGCTCAAAAGCTTGGACTCCACGTCTCACCCAGTACTGTGGACCAG
GTTAGCACGCCACTAGCTGCAAAGAAGTCACGGATCTAA

Translation (1552 aa):
MPLLHRKPFVRQKPPGDLRPDEEVFYCKVTNEIFRHYDDFFERTILCNSLVWSCAVTGRPGLTYQEALES
ERKARQNLQSFPEPLIIPVLYLTNLTRRSRLHEICDDIFAYVKDRYFVEETVEVIRNNGTRLQCRILEVL
PPLHQNGFANGHLSSADGETIVISDSDDSETQSSSFHHGKKKDAIDPLLFRYRVQPTKKEMYESAVVKAT
QISRRKHLFSRDKLKLFLKQHCEAQDGVIKIKASSFSAYNIAEQDFSYFFPDDPPTFIFSPANRRRGRPP
KRISFGQEDSIASKQTAARYRNKAIKERDKLLKQEEMRALAFEKAKLKRERADALEARKREKEDKEKKRE
ELKKMVEEERLKKKEEKERLKIEREKEREKLREEKRKYMEYLKQWSKPREDMECDDLKELPEPTPVKTRL
PPEVFGDALMVLEFLNAFGELFDLQDEFPEGVTLEVLEEALVGNDSEGPLCELLFFFLTAIFQAMAEEEE
EVAKEQITDADTKDLTEALDEDADPTKSALSAVAALAAAWPQLHQGCSLKSLDLDSCTLSEILRLHILAS
GADVTSANAKYRYQKRGGFDATDDACMELRLSNPSLVKKLSSTSVYDLTPGEKMKILHALCGKLLTLVST
RDFIEDYVDVLRQAKQEFRELKAEQHRKEREATAARIRRRKEEKLKEQEQKMKEKQEKLKEDEQRNSAAV
PGEEEREDFDTSTENKNIEQKDLDPDVVTEDEDDPGSHKRSRRGKVGQTAVKQCIKQEEMNYCIKQEPLS
ADAEEALRQEQQQKEKELLDKIQSAIACTNIFPLGRDRLYRRYWIFPSIPGLFIEEDYSGLTEDMLLPRP
SSFHNNAQPRDPQVSIKTEESFLSESTSSLDQGPFDDSVLLPKPVHKPNRWCFYSSCAQLDQLIDALNSR
GHRESALKETLLQEKSRICAQLAHFSEEKFHFSDKPQADSKPVSSRGRSSGACDISQMSAERQLELRLRD
FLLDIEDRIYQGTLGAIKVTDRQVWRSALENGRYELLSEESKENGVIKTVNEDVEEMEMEQARVIVRDRL
LGIKTETPSTISTSASTPQSVSNVVHYLALALFQIEQGIERRFLKAPLDGNDSGRSYKTVLDRWRESLLS
SASLSQVFLHLSTLDRSVMWSKSILNARCKICRKKGDAENMVLCDGCDRGHHTYCVRPKLKAVPDGDWFC
PECRPKQRSRRLSSRQRPSLESDEEMEEGMEDDDDEVDDDDEEGQSEEEEYEVEQDEEDSDDDEALSPPK
RGRPQVRLPIKTKGRFGPSFPSRSQRQDPGRYPSRSQQSTPKNTAKSASKNLRKTRSAPPTETRSLRVGS
RSTRHSPSALQDVFVELLSPHSKRRGRKGADHTPEHSPSFTNFRVSTSRSSRQLIPLNTAESLSLQHSES
KRRGRKRQSTESSPVPLNRRSSGRQGGVHELSAFEQLVVELVRHDDSWPFLKLVSKIQVPDYYDIIKKPI
ALNIIREKVNKCEYKLASEFIDDIELMFSNCFEYNPRNTSEAKAGTRLQAFFHIQAQKLGLHVSPSTVDQ
VSTPLAAKKSRI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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