NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS56837.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56837.1 Reviewed, update pending Mus musculus 12 Snx13 23 108 98 CCDS HistoryNCBI Gene:217463Re-query CCDS DB by CCDS ID:56837.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 56837.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000048519.16 ENSMUSP00000038430.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000048519.16Link to Ensembl Protein Viewer:ENSMUSP00000038430.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000048519Re-query CCDS DB by Protein ID:ENSMUSP00000038430
Original member NCBI NM_001014973.2 NP_001014973.2 Updated not alive Link to Nucleotide Sequence:NM_001014973.2Link to Protein Sequence:NP_001014973.2Re-query CCDS DB by Nucleotide ID:NM_001014973Re-query CCDS DB by Protein ID:NP_001014973
Current member NCBI NM_001014973.3 NP_001014973.3 Pending alive Link to Nucleotide Sequence:NM_001014973.3Link to Protein Sequence:NP_001014973.3Re-query CCDS DB by Nucleotide ID:NM_001014973Re-query CCDS DB by Protein ID:NP_001014973Link to BLAST:NP_001014973.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014973.3 957 Q6PHS6 957 100% 0 0

Chromosomal Locations for CCDS 56837.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 35047397 35047411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35078900 35079012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35082869 35082971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35085939 35086028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35086863 35086984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35091363 35091484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35091569 35091670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35092825 35092913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35098230 35098313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35100539 35100677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35101021 35101109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35103041 35103140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35105107 35105300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35106713 35106817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35107424 35107556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35110624 35110661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35112435 35112504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35119766 35119905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35122918 35123025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35124430 35124540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35132021 35132182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35133309 35133380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35138026 35138171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35138400 35138468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35140168 35140280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 35144089 35144336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2877 nt):
ATGATGTTAACAGAGGCCAGTCTATCCATATGGGGATGGGGAAGCCTTGGCATTGTCCTTTTTCTAATAA
CCTTTGGACCCTTTGTAATATTTTATTTGGCATTTTATATCCTCTGCTTTGTGGGAGGGGGTTTAGTGGT
TACTCTTCTGTATGGGAAAACTAACTCAGAAAAATACCTAGAACAGTGTGAACACTCATTTCTTCCTCCA
ACATCATCTGGGGTTCCTAAGTGCTTAGAAGAAATGAAACGCGAAGCCAGGACTATAAAGATTGACAGAA
GATTGACGGGTGCCAATATAATTGATGAGCCTCTCCAGCAAGTTATCCAGTTTTCCTTGAGGGATTATGT
CCAGTACTGGTATTATACATTAAGTGATGATGAGTCATTTCTTCTTGAAATTAGGCAAACTCTTCAAAAT
GCGCTCATTCAGTTTGCTACTAGGTCAAAAGAAATAGACTGGCAGCCTTATTTTACTACACGCATTGTAG
ATGATTTTGGCACTCACCTACGAGTATTCAGAAAGGCCCAACAGAGAGTAACAGAGAAAGACGATCAAGT
AAAAGGTACAGCAGAGGATCTGGTAGAAACCTTTTTTGAAGTTGAAGTTGAAATGGAGAAGGATGTTTGC
CGGGATCTAGTGTGCACTTCTCCCAAAGATGAAGAAGGATTCCTAAGGGATTTGTGTGAGGTTTTATTAT
ATTTATTGCTACCTCCTGGAGATTTCCAGAGCAAGATCATGCGATACTTTGTCAGGGAAATCCTTGCACG
AGGAATTCTTCTTCCATTAATAAATCAACTCAGTGATCCTGATTATATTAATCAATATGTCATATGGATG
ATCCGTGATTCAAATTGCAACTATGAGGCCTTTATGAACATTATTAAATTAAGTGACAATATTGGAGAGT
TAGAGGCAGTCAGAGATAAGGCAGCAGAAGAGCTACAGTATCTTAGATCCTTAGATACAGCCGGTGATGA
TATCAACACTATCAAAAATCAAATAAATAGCTTATTATTTGTAAAGAAAGTATGTGATTCAAGAATACAG
CGGTTACAGTCAGGCAAAGAAATAAATACTGTGAAGCTAGCAGCAAACTTTGGGAAACTTTGTACAGTCC
CCTTGGACAGCATTCTTGTAGACAATGTTGCACTACAATTTTTTATGGATTATATGCAGCAAACTGGAGG
CCAAGCACATCTCTTCTTCTGGATGACAGTGGAAGGGTACCGGGTTACAGCCCAGCAACAGCTCGAGGTT
CTCTCAGGTCGCCAGAGAGATGGCAAACAGCAGACCAACCAAACCAAAGGTCTTTTAAGAGCAGCAGCTG
TTGGAATTTATGAGCAGTATTTATCTGAAAAGGCATCTCCAAGAGTTACTGTTGATGACTATTTAGTGGC
AAAACTAGCAGATACTTTGAATCATGAAGACCCAACTCCAGAAATCTTTGATGACATTCAAAGAAAGGTA
TATGAACTGATGCTACGAGATGAAAGATTTTATCCTTCCTTTAGGCAGAATGCGCTCTATGTGCGAATGC
TAGCTGAGCTTGACATGTTAAAAGATCCTAGTTTCAGAGGATCAGATGATGGGGATGGAGAATCTTTTAA
TGGGTCTCCTACAGGAAGCATAAATTTGTCTTTAGATGACCTTTCAAGTGTGACTTCTGATGATTCTGTA
CAACTTCATGCCTACATTTCAGACACTGGCGTTTGTAATGATCATGGCAAGACATATGCACTATATGCCA
TCACTGTACACCGGCGCAACCTAAACACTGAGGAGATGTGGAAAACCTATCGGCGTTATAGTGACTTCCA
TGACTTCCACATGAGAATCACTGAGCAGTTTGAAAATCTGTCAAGCATATTGAAGCTTCCTGGTAAAAAG
ACGTTTAACAATATGGATAGAGATTTTTTAGAAAAGAGGAAAAAGGATTTAAATGCCTACTTGCAGTTAC
TCTTGACTCCTGAAATGATGAAGGCATCCCCGGCGCTGGCTCACTGTGTCTATGATTTCCTTGAGAACAA
AGCCTACAGTAAAGGGAAGGGTGATTTTGCTCGAAAGATGGACACTTTCGTAAATCCGCTTCGCAACTCT
ATGAGGAATGTTTCAAATGCAGTCAAATCCCTTCCTGATAGCTTGGCAGAAGGAGTGACAAAAATGTCGG
ACAACGTGGGCAGAATGTCAGAGAGATTAGGGCAAGACATAAAGCAGTCATTTTTTAAGGTCCCTCCTTT
AATTACGAAGACTGATTCAGATCCTGAACATTGTCGAGTCTCAGCTCAGCTTGATGATAATGTGGATGAC
AATATTCCACTTAGGGTAATGCTGCTTCTAATGGATGAGGTGTTTGACTTAAAAGAGAGAAACCAGTGGT
TGAGAAGGAATATCAAGAATTTACTCCAGCAGCTTATTAGAGCTACATATGGTGATACTATTAACAGAAA
AATAGTTGACCATGTTGACTGGATGACCTCACCGGAACAAGTAGCTGACTCGGTGAAGCGTTTCAGAGAT
GCATTTTGGCCCAATGGCATTTTAGCAGAGACTGTCCCATGCAGAGATAAAGCTATTCGAATGAGAACAA
GAATTGCAGGAAAAACAAAATTATTTGCAATTATGCCAGATGAACTGAAGCACATTATTGGAGCGGAGAC
AACACGGAAAGGTATTCTTCGCGTGTTTGAAATGTTTCAGCACAACCAGCTAAATAGGAGAATGGTGTAT
GTCTTCTTAGAAGGCTTTTTAGAAACCTTATTTCCACAGTATAAATTTCGTGAACTTTTCAACAAACTTC
ATTCAAGGTCAAAGCAAATGCAGAAATATAAACAAAAACTTCAAAGTACTCAAGCGCCTTCTTTACAAAA
AAGGTGA

Translation (958 aa):
MMLTEASLSIWGWGSLGIVLFLITFGPFVIFYLAFYILCFVGGGLVVTLLYGKTNSEKYLEQCEHSFLPP
TSSGVPKCLEEMKREARTIKIDRRLTGANIIDEPLQQVIQFSLRDYVQYWYYTLSDDESFLLEIRQTLQN
ALIQFATRSKEIDWQPYFTTRIVDDFGTHLRVFRKAQQRVTEKDDQVKGTAEDLVETFFEVEVEMEKDVC
RDLVCTSPKDEEGFLRDLCEVLLYLLLPPGDFQSKIMRYFVREILARGILLPLINQLSDPDYINQYVIWM
IRDSNCNYEAFMNIIKLSDNIGELEAVRDKAAEELQYLRSLDTAGDDINTIKNQINSLLFVKKVCDSRIQ
RLQSGKEINTVKLAANFGKLCTVPLDSILVDNVALQFFMDYMQQTGGQAHLFFWMTVEGYRVTAQQQLEV
LSGRQRDGKQQTNQTKGLLRAAAVGIYEQYLSEKASPRVTVDDYLVAKLADTLNHEDPTPEIFDDIQRKV
YELMLRDERFYPSFRQNALYVRMLAELDMLKDPSFRGSDDGDGESFNGSPTGSINLSLDDLSSVTSDDSV
QLHAYISDTGVCNDHGKTYALYAITVHRRNLNTEEMWKTYRRYSDFHDFHMRITEQFENLSSILKLPGKK
TFNNMDRDFLEKRKKDLNAYLQLLLTPEMMKASPALAHCVYDFLENKAYSKGKGDFARKMDTFVNPLRNS
MRNVSNAVKSLPDSLAEGVTKMSDNVGRMSERLGQDIKQSFFKVPPLITKTDSDPEHCRVSAQLDDNVDD
NIPLRVMLLLMDEVFDLKERNQWLRRNIKNLLQQLIRATYGDTINRKIVDHVDWMTSPEQVADSVKRFRD
AFWPNGILAETVPCRDKAIRMRTRIAGKTKLFAIMPDELKHIIGAETTRKGILRVFEMFQHNQLNRRMVY
VFLEGFLETLFPQYKFRELFNKLHSRSKQMQKYKQKLQSTQAPSLQKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH