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Report for CCDS48984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48984.1 Public Mus musculus 11 Rnf157 23 108 98 CCDS HistoryNCBI Gene:217340Re-query CCDS DB by CCDS ID:48984.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48984.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100202.9 ENSMUSP00000097776.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100202.9Link to Ensembl Protein Viewer:ENSMUSP00000097776.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000100202Re-query CCDS DB by Protein ID:ENSMUSP00000097776
Original member NCBI NM_027258.1 NP_081534.1 Updated not alive Link to Nucleotide Sequence:NM_027258.1Link to Protein Sequence:NP_081534.1Re-query CCDS DB by Nucleotide ID:NM_027258Re-query CCDS DB by Protein ID:NP_081534
Current member NCBI NM_027258.2 NP_081534.1 Accepted alive Link to Nucleotide Sequence:NM_027258.2Link to Protein Sequence:NP_081534.1Re-query CCDS DB by Nucleotide ID:NM_027258Re-query CCDS DB by Protein ID:NP_081534Link to BLAST:NP_081534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081534.1 681 Q3TEL6-2 681 99.7063% 0 2

Chromosomal Locations for CCDS 48984.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 116338706 116338830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116344195 116344305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116345907 116345955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116347033 116347098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116347342 116347511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116347856 116347967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116349334 116349442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116349960 116350198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116354365 116354477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116354636 116354795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116355445 116355516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116358669 116358716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116358936 116358979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116359243 116359309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116359813 116359930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116360254 116360400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116362285 116362373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116396189 116396307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 116412697 116412784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2046 nt):
ATGGGGGCCCTGACGAGCCGGCAGCACGCGGGCGTGGAGGAGGTGGACATCCCGTCCAATTCCGTGTACC
GCTACCCGCCCAAGTCCGGCAGCTATTTTGCCAGCCACTTCATCATGGGAGGAGAGAAGTTTGACTCCAC
GCATCCGGAGGGTTACCTGTTTGGCGAGAACAGCGACCTGAACTTCCTGGGAAACAGGCCGGTGGCGTTC
CCTTACGCTGCCCCGCCTCCCCAAGAACCTGTGAAGACTCTGAGAAGCCTGATCAACATCCGGAAGGACA
CGCTGAGACTTGTCAAATGTGCTGAGGAAGTGAAGAGCCACGGAGAAGAGGCAGGCAAAGCTAAGGTCCA
CTACAATGTCGAGTTCACCTTTGACACAGATGCCCGGGTAGCCATCACCATCTACTACCAGGCCACTGAG
GAATTCCAGAATGGCATTGCCAGCTACATTCCAAAAGACAACAGCCTGCAGTCAGAGACCGTGCACTACA
AGCGAGGGGTGTGCCAGCAGTTCTGCCTGCCCTCCCATACCGTGGACCCCTCGGAGTGGGCCGAAGAGGA
GCTTGGCTTTGATCTGGACCGTGAAGTCTACCCTCTGGTAGTGCACGCTGTGGTGGATGAAGGAGATGAG
TATTTTGGCCACTGCCACGTGCTTCTGGGCACTTTTGAGAAGCACCCGGACGGGACCTTCTGTGTGAAGC
CCCTCAAGCAGAAGCAAGTGGTGGATGGGGTCAGCTACCTTCTTCAGGAGATCTATGGGATTGAAAACAA
GTACAACACACAAGATTCCAAGGTGGCAGAGGACGACGTCAGTGACAACAGCGCTGAGTGTGTGGTGTGT
CTCTCTGACGTCCGCGATACTTTGATCCTGCCCTGCCGGCACCTCTGCCTCTGCAACACCTGCGCAGACA
CCCTGCGCTACCAGGCCAACAACTGCCCCATCTGCCGGCTGCCCTTCCGGGCACTGCTTCAGATCCGAGC
CATGAGGAAAAAACTGGGCCCTCTGTCCCCAAGCAGCTTTAACCCCATCATCTCTTCCCAGACCTCGGAC
TCTGAGGAGCATTCATCCTCAGAGAACATCCCCCCGGGCTATGAAGTGGTGTCTCTCCTCGAGGCCCTCA
ACGGGCCCCTCACCTCGTCCCCGGCAGTGCCTCCCCTTCACGTTCTTGGGGATGGCCACCTCTCAGGAAT
GCTCCCGTCCTATGGCAGTGATGGCTACCTGCCCCCTGTTAGGACACTGTCCCCCCTTGACCGCCTGTCT
GACTGCAACAACCAAGGACTCAAACTCAAAAAGAGTCTATCCAAATCCATTTCCCAGAATTCTTCTGTGC
TTCACGAAGAGGAAGATGAGCGCTCTTGCAGTGAGTCAGACACTCAGCTCTCTCAGAGGCTCTCAGTCCA
GCACCCTGAAGAGGGACCCGACGTGACTCCAGAGAGTGAGAACCTCACCCTGTCCTCCTCAGGGGCTGTT
GACCAGTCGTCTTGCACAGGGACTCCGCTCTCTTCTACCATCTCCTCCCCAGAAGACCCAGCCAGCAGCA
GCCTGGCCCAGTCAGTCATGTCCATGGCTTCCTCCCAGATCAGCACCGACACGGTGTCCTCCATGTCTGG
CTCCTACATCGCACCTGGTACAGAAGAAGAAGGAGAAGCCCTGCCTTCCCCCCGAGCTGCTAGCAGGGCC
CCTTCAGAAGGAGAGGAGACACCAGCAGAGTCCCCAGACAGCAATTTCGCTGGCCTTCCAGCTGGAGAGC
AGGATGCAGAGGGAAATGATATCATAGAGGAAGAGGACAGATCACCTGTGCGAGAAGATGGCCAGAGGAC
ATGCGCATTTCTAGGCATGGAGTGTGACAATAACAATGACTTTGACGTCGCAAGCGTGAAAGCACTGGAC
AATAAGCTGTGCTCTGAGGTCTGCTTACCCGGTACCTGGCAGCATGAGGATAACACTGTCAACTGTCGCC
ATACCCAGCGCCGGCGCTTATCCTCCAGCAGCCTGGAGGACCCTGAGGAGAACAGGCCTTGTGTATGGGA
TCCTATGGCTGTCTGA

Translation (681 aa):
MGALTSRQHAGVEEVDIPSNSVYRYPPKSGSYFASHFIMGGEKFDSTHPEGYLFGENSDLNFLGNRPVAF
PYAAPPPQEPVKTLRSLINIRKDTLRLVKCAEEVKSHGEEAGKAKVHYNVEFTFDTDARVAITIYYQATE
EFQNGIASYIPKDNSLQSETVHYKRGVCQQFCLPSHTVDPSEWAEEELGFDLDREVYPLVVHAVVDEGDE
YFGHCHVLLGTFEKHPDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDDVSDNSAECVVC
LSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIRAMRKKLGPLSPSSFNPIISSQTSD
SEEHSSSENIPPGYEVVSLLEALNGPLTSSPAVPPLHVLGDGHLSGMLPSYGSDGYLPPVRTLSPLDRLS
DCNNQGLKLKKSLSKSISQNSSVLHEEEDERSCSESDTQLSQRLSVQHPEEGPDVTPESENLTLSSSGAV
DQSSCTGTPLSSTISSPEDPASSSLAQSVMSMASSQISTDTVSSMSGSYIAPGTEEEGEALPSPRAASRA
PSEGEETPAESPDSNFAGLPAGEQDAEGNDIIEEEDRSPVREDGQRTCAFLGMECDNNNDFDVASVKALD
NKLCSEVCLPGTWQHEDNTVNCRHTQRRRLSSSSLEDPEENRPCVWDPMAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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