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Report for CCDS29907.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29907.1 Public Mus musculus 19 Tectb 23 108 98 CCDS HistoryNCBI Gene:21684Re-query CCDS DB by CCDS ID:29907.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29907.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000025936.11 ENSMUSP00000025936.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000025936.11Link to Ensembl Protein Viewer:ENSMUSP00000025936.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000025936Re-query CCDS DB by Protein ID:ENSMUSP00000025936
Original member Current member NCBI NM_009348.4 NP_033374.2 Accepted alive Link to Nucleotide Sequence:NM_009348.4Link to Protein Sequence:NP_033374.2Re-query CCDS DB by Nucleotide ID:NM_009348Re-query CCDS DB by Protein ID:NP_033374Link to BLAST:NP_033374.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033374.2 329 O08524 329 100% 0 0

Chromosomal Locations for CCDS 29907.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 55181015 55181090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55181795 55181985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55183717 55183859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55183963 55184035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55189562 55189665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55189788 55189871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55191425 55191587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55192564 55192636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55193840 55193872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 55194659 55194708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGTGGTCAGGGCCTTCGTTTTGCTGGCCCTCTTTGCAGAAGCCTCAGCGAAATCATGCACTCCGAATA
AAGCAGATGTCATCCTTGTGTTTTGTTATCCCAAGACCATCATCACTAAAATCCCCGAGTGTCCCTATGG
ATGGGAAGTACACCAGCTGGCACTCGGGGGGCTGTGTTACAACGGGGTCCATGAAGGTGGCTATTACCAG
TTTGTCATCCCTGATCTGTCACCTAAGAACAAGTCCTACTGTGGAACCCAGTCAGAGTACAAGCCCCCCA
TCTACCACTTCTACAGCCACATCGTGTCCAACGACAGCACAGTGATCGTGAAGAACCAGCCCGTCAACTA
CTCCTTCTCCTGCACCTACCACTCCACCTACTTGGTGAACCAGGCTGCTTTTGACCAGAGAGTGGCCACT
GTTCACGTCAAGAACGGGAGCATGGGCACATTTGAAAGCCAGTTGTCCCTCAACTTCTACACTAATGCCA
AGTTTTCCACCAAAAAAGAAGCTCCCTTCGTTCTGGAAACGTCCGAAATCGGCTCAGATCTGTTTGCGGG
AGTAGAAGCCAAAGGCCTAAGCGTTCGGTTCAAAGTGGTCTTGAATAGCTGCTGGGCCACCCCCTCGGCT
GACTTCATGTACCCCTTACAGTGGCAGCTCATCAATAAGGGCTGCCCCACCGATGAGACAGTCCTCGTGC
ATGAGAACGGCAAAGACCACAGGGCCACTTTCCAATTCAATGCCTTCCGGTTCCAGAACATCCCCAAACT
TTCCAAGGTTTGGTTACACTGTGAGACGTTCATCTGCGACAGTGAGAAGCTCTCCTGCCCCGTGAACTGT
GACAAACGGAAGCGCATGCTACGTGACCAGACAGGAGGTGTCCTGGTTGTGGAGTTGTCCCTGAGGAGCA
GGGCATTTTCCGGCCTCTGTGACTTCTCAGATGTTCTTCTTCACCTCATCCTGATGCTGGGGACCTGGGC
TGTGTTGTAG

Translation (329 aa):
MVVRAFVLLALFAEASAKSCTPNKADVILVFCYPKTIITKIPECPYGWEVHQLALGGLCYNGVHEGGYYQ
FVIPDLSPKNKSYCGTQSEYKPPIYHFYSHIVSNDSTVIVKNQPVNYSFSCTYHSTYLVNQAAFDQRVAT
VHVKNGSMGTFESQLSLNFYTNAKFSTKKEAPFVLETSEIGSDLFAGVEAKGLSVRFKVVLNSCWATPSA
DFMYPLQWQLINKGCPTDETVLVHENGKDHRATFQFNAFRFQNIPKLSKVWLHCETFICDSEKLSCPVNC
DKRKRMLRDQTGGVLVVELSLRSRAFSGLCDFSDVLLHLILMLGTWAVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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