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Report for CCDS24758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24758.1 Public Mus musculus 11 Iba57 23 108 98 CCDS HistoryNCBI Gene:216792Re-query CCDS DB by CCDS ID:24758.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000054523.5 ENSMUSP00000049823.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000054523.5Link to Ensembl Protein Viewer:ENSMUSP00000049823.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000054523Re-query CCDS DB by Protein ID:ENSMUSP00000049823
Original member Current member NCBI NM_173785.6 NP_776146.1 Accepted alive Link to Nucleotide Sequence:NM_173785.6Link to Protein Sequence:NP_776146.1Re-query CCDS DB by Nucleotide ID:NM_173785Re-query CCDS DB by Protein ID:NP_776146Link to BLAST:NP_776146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776146.1 358 Q8CAK1 358 100% 0 0

Chromosomal Locations for CCDS 24758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 59158265 59158659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59158838 59159178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 59163351 59163691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGCAGCGGTGGCGCTGCTTCGGGGCGCGGCTGTGGGGCGCAGAAGCCCAGCTTGGCACTGGCGGCTGA
GCGGGACCGCGAGTCACTGCCTAGCCCGTGGCTTTGGCCTTCTTGGCAGCAACCCCGCGGACGGTGTGGC
CTGGACTTGCTTCCGGCTGGACGGGCGCGCCTTAGTGCGCGTGCGCGGCCCGGACGCTGCACCCTTCCTG
TTGGGACTATCGACCAATGAGCTGCCGCTTTCGGGGCCTCCGACCGGCGCGGCTCAGCCCTCTGCGCGTG
CGGCGTATGCCCATTTCCTGAATGTGCAGGGACGCACGCTCTATGACGTCATTCTGTATGGACTCCCAGA
GTGTACGGAGGGGGCACCAAGCTTTCTCCTGGAGTGTGACAGCTCCGTGCTGGGCGCCCTACAGAAGCAC
CTCTCCATGTACAAGATCCGGCGGAAGGTCACCGTGGAGCCAAGTCCGGAGCTCCACGTGTGGGCTGTGC
TACCCTGTGTCCCCCAAACCTCTGAGACTGCACCTCTAGAAGAGAGGGTAGAAGGCACCACCATGCTTAT
CCGTGACCCCCGGACTGCACGTATGGGGTGGCGGCTTCTCACCCAGGATGATGGCCCAGCCCTGGTGCCC
AGGGGACAGCTTGGGGATCTCCAAGATTATCACAAGTACCGGTACCAGCAAGGCATCCCCGAGGGAGTCT
GTGATCTTCCCCCAGGGATGGCCCTCCCCCTGGAGTCCAACCTGGTCTTCATGAATGGCGTGAGCTTCAC
GAAGGGCTGCTACATTGGGCAGGAGCTGACGGCCCGGACCCACCATACAGGTGTCATCCGCAAGCGCCTC
TTCCCAGTGAAGCTTGAAGGCCCCCTGCCTGCAAGTGGCGTCAGCCCTGGCGCCATAGTGACGGTGACTG
CCACAGGCCAGGCAGCGGGCAAGTTCAGGGCTGGCCAGGGACACGTGGGACTGGCTTTGCTGCGGTCAGA
GACAATCAAGGGTCCTCTCCACATCAAGACCTCCGAGAGCCAGTTGGTGGCTGTGACTGCCGTGGTGCCG
GACTGGTGGCCCACAGCTGCCAAGTAG

Translation (358 aa):
MAAVALLRGAAVGRRSPAWHWRLSGTASHCLARGFGLLGSNPADGVAWTCFRLDGRALVRVRGPDAAPFL
LGLSTNELPLSGPPTGAAQPSARAAYAHFLNVQGRTLYDVILYGLPECTEGAPSFLLECDSSVLGALQKH
LSMYKIRRKVTVEPSPELHVWAVLPCVPQTSETAPLEERVEGTTMLIRDPRTARMGWRLLTQDDGPALVP
RGQLGDLQDYHKYRYQQGIPEGVCDLPPGMALPLESNLVFMNGVSFTKGCYIGQELTARTHHTGVIRKRL
FPVKLEGPLPASGVSPGAIVTVTATGQAAGKFRAGQGHVGLALLRSETIKGPLHIKTSESQLVAVTAVVP
DWWPTAAK


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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