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Report for CCDS48761.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48761.1 Public Mus musculus 11 Efemp1 23 108 98 CCDS HistoryNCBI Gene:216616Re-query CCDS DB by CCDS ID:48761.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48761.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020759.11 ENSMUSP00000020759.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020759.11Link to Ensembl Protein Viewer:ENSMUSP00000020759.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000020759Re-query CCDS DB by Protein ID:ENSMUSP00000020759
Original member Current member NCBI NM_146015.2 NP_666127.2 Accepted alive Link to Nucleotide Sequence:NM_146015.2Link to Protein Sequence:NP_666127.2Re-query CCDS DB by Nucleotide ID:NM_146015Re-query CCDS DB by Protein ID:NP_666127Link to BLAST:NP_666127.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666127.2 493 Q8BPB5 493 100% 0 0

Chromosomal Locations for CCDS 48761.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 28854474 28854554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28867466 28867514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28867653 28868039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28910610 28910732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28914588 28914707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28915661 28915780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28916850 28916969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28921403 28921526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28921611 28921806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 28926157 28926318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGTTGCAAACACTTTTCCTAACTATGCTGACTCTGGCGCTGGTCAAGTCACAGTACACCGAGGAAACCA
TCACATACACGCAATGCACCGATGGATATGAATGGGACCCCATAAGACAGCAGTGTAAAGATATTGATGA
ATGTGACATTGTCCCAGATGCTTGCAAAGGTGGAATGAAATGTGTCAACCACTATGGAGGATATCTCTGC
CTTCCTAAAACAGCCCAAATTATTGTCAATAATGAGCATCCTCAGCAAGAAACACCAGCTGCAGAAGCTT
CGTCAGGTGCCACCACTGGGACTGTAGCTGCCAGGAGCATGGCAACCAGTGGTGTGGTGCCTGGGGGTGG
CTTCATGGCCAGTGCTACTGCAGTTGCTGGCCCTGAAGTTCAAACTGGCCGAAATAACTTTGTCATCCGA
AGAAACCCAGCTGACCCTCAGCGCATCCCTTCCAACCCTTCCCACCGGATCCAGTGTGCAGCAGGCTATG
AACAGAGTGAGCATAATGTGTGCCAAGATATTGATGAGTGCACCTCAGGGACTCACAATTGTAGAACGGA
CCAAGTATGCATCAATTTACGAGGTTCCTTCACATGTCAGTGTCTTCCTGGGTATCAGAAGCGAGGTGAA
CAGTGTGTGGATATAGATGAATGCACAGTGCCTCCATATTGCCACCAAAGATGTGTTAACACACCTGGTT
CCTTCTACTGCCAGTGCAGTCCAGGGTTTCAGCTGGCAGCAAACAACTACACTTGTGTGGATATAAATGA
ATGTGATGCCAGCAACCAGTGTGCTCAACAATGCTACAACATTCTTGGCTCATTCATCTGTCAGTGTAAT
CAAGGATATGAACTAAGCAGTGACAGACTCAACTGTGAAGACATCGACGAATGCAGAACCTCAAGCTACC
TATGCCAATATCAATGTGTCAATGAACCTGGGAAGTTCTCATGTATGTGCCCACAGGGTTACGAAGTGGT
GCGCAGCAGAACCTGTCAGGATATAAATGAATGTGAGACCACCAATGAATGCCGAGAAGATGAGATGTGC
TGGAATTACCATGGGGGCTTCCGCTGTTACCCACGAAACCCATGTCAAGATCACTATGTTCTAACATCAG
AAAACCGATGTGTTTGCCCAGTCTCAAACACTATGTGCCGGGAGCTGCCCCAGTCCATTGTCTACAAATA
CATGAGCATCCGATCTGACAGGTCCGTGCCTTCAGACATCTTCCAGATACAGGCAACAATGATTTATGCA
AACACCATTAATACTTTTCGGATTAAATCTGGAAATGAAAATGGAGAGTTCTACCTACGACAAACAAGCC
CTGTGAGTGCAATGCTGGTGCTTGTGAAGTCTCTATCAGGACCAAGAGAATACATCGTGGACCTGGAGAT
GCTGACAGTCAGTAGTATAGGAACCTTCCGCACAAGCTCTGTGTTAAGATTGACAATAATAGTGGGGCCA
TTTTCATTTTAG

Translation (493 aa):
MLQTLFLTMLTLALVKSQYTEETITYTQCTDGYEWDPIRQQCKDIDECDIVPDACKGGMKCVNHYGGYLC
LPKTAQIIVNNEHPQQETPAAEASSGATTGTVAARSMATSGVVPGGGFMASATAVAGPEVQTGRNNFVIR
RNPADPQRIPSNPSHRIQCAAGYEQSEHNVCQDIDECTSGTHNCRTDQVCINLRGSFTCQCLPGYQKRGE
QCVDIDECTVPPYCHQRCVNTPGSFYCQCSPGFQLAANNYTCVDINECDASNQCAQQCYNILGSFICQCN
QGYELSSDRLNCEDIDECRTSSYLCQYQCVNEPGKFSCMCPQGYEVVRSRTCQDINECETTNECREDEMC
WNYHGGFRCYPRNPCQDHYVLTSENRCVCPVSNTMCRELPQSIVYKYMSIRSDRSVPSDIFQIQATMIYA
NTINTFRIKSGNENGEFYLRQTSPVSAMLVLVKSLSGPREYIVDLEMLTVSSIGTFRTSSVLRLTIIVGP
FSF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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