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Report for CCDS24481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24481.1 Public Mus musculus 11 Papolg 23 108 98 CCDS HistoryNCBI Gene:216578Re-query CCDS DB by CCDS ID:24481.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24481.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020513.9 ENSMUSP00000020513.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020513.9Link to Ensembl Protein Viewer:ENSMUSP00000020513.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000020513Re-query CCDS DB by Protein ID:ENSMUSP00000020513
Original member Current member NCBI NM_172555.2 NP_766143.2 Accepted alive Link to Nucleotide Sequence:NM_172555.2Link to Protein Sequence:NP_766143.2Re-query CCDS DB by Nucleotide ID:NM_172555Re-query CCDS DB by Protein ID:NP_766143Link to BLAST:NP_766143.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766143.2 739 Q6PCL9 739 100% 0 0

Chromosomal Locations for CCDS 24481.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 23863958 23864056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23866411 23866467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23866630 23866695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23867198 23867418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23867502 23867590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23867957 23868126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23868359 23868480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23870193 23870302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23870743 23870862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23872427 23872480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23873228 23873312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23873790 23873910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23874475 23874547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23876320 23876458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23879874 23879963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23882183 23882294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23884061 23884114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23885164 23885273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23885491 23885572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23890229 23890295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23891743 23891904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 23895022 23895038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2220 nt):
ATGAAAGAGATGTCTGCAAACACTATGCTGGACAGCCAGCGTCAACAGAAGCATTATGGAATTACCTCTC
CAATTAGTTTGGCATGTCCTAAAGAAATTGATCATATTTATACACAGAAGTTAATTGATGCCATGAAGCC
ATTTGGAGTATTTGAAGATGAGGAAGAATTGAACCACAGGCTGGTTGTTCTTGGTAAATTGAACAATTTA
GTAAAAGAATGGATTTCTGACATCAGTGAAAGTAAGAATCTCCCACCTTCTGTTGTGGCTACTGTTGGTG
GTAAAATTTTCACATTTGGATCTTACAGGCTTGGAGTACACACCAAAGGAGCTGATATTGATGCACTTTG
TGTTGCCCCAAGACATGTAGAGAGATCAGATTTTTTTCAGTCCTTTTTTGAAAAATTGAAACATCAAGAT
GGCATTAGAAACTTAAGAGCTGTAGAAGATGCTTTTGTACCTGTTATAAAATTTGAATTTGATGGTATTG
AAATTGATCTAGTCTTTGCAAGACTGGCAATACAAACCATATCAGATAATTTAGACCTAAGAGATGACTC
TCGCCTGAGAAGCCTTGATATACGGTGCATTAGAAGTTTAAATGGATGTAGAGTTACTGATGAAATTTTG
CACTTAGTGCCAAATAAAGAAACTTTTAGACTCACCCTAAGAGCAGTCAAATTATGGGCAAAGCGCCGTG
GTATTTATTCCAATATGCTGGGATTCCTTGGTGGTGTCTCCTGGGCAATGCTAGTTGCCAGAACTTGCCA
ACTGTACCCAAATGCAGCAGCTTCAACTTTAGTTCACAAGTTTTTTTTAGTTTTTTCCAAATGGGAATGG
CCAAATCCTGTGCTGTTGAAGCAACCAGAAGAAAGCAACTTGAACTTGCCTGTCTGGGATCCTCGGGTAA
ATCCGTCAGACAGGTATCATCTTATGCCAATAATTACCCCTGCCTACCCACAACAGAATTCTACATATAA
TGTGTCTACATCAACTCGAACAGTAATGGTAGAAGAATTTAAACAAGGTCTTGCAGTTACAGATGAAATT
CTTCAAGGGAAATCAGATTGGTCCAAACTATTAGAGCCACCAAATTTCTTTCAAAAATACAGACATTATA
TAGTACTGACTGCCAGTGCATCAACAGAAGAGAACCATCTAGAATGGGTTGGATTAGTAGAATCTAAAAT
CCGTGTACTTGTTGGAAACTTGGAACGGAATGAATTTATTACTCTTGCCCATGTGAATCCCCAGTCATTC
CCAGGAAATAAAGAACATCATAAAGCCAACAATTACGTATCAATGTGGTTCCTTGGGATAATTTTTCGGA
GAGTAGAAAATGCAGAAAGTGTTAACATAGACTTGACATATGATATCCAGTCATTTACTGATACAGTGTA
CAGGCAGGCAAACAATATAAATATGCTGAAGGATGGGATGAAAATTGAAGCAACTCATGTAAAGAAAAAG
CAGCTTCATCATTACCTACCAGCAGAGATTCTTCAAAAGAAGAAAAAGAGTCTTTCTGATGTAAGTCGGA
GTTCAGGGGGCCTTCAGTCCAAAAGATCATCTCTGGATAGCACTTGTCTGGATAGCTCCAGAGACACTGA
CAGTGGAACACCTTTTAACTCTCCGGTGTCTGCAAATAAGCCTTCCAACCCAGACAGCCCCACAGGAGAA
ATAGAAAGGAGTAGTGCTGAGCCTGTGGCTGTGGTTGTGGAGAAGCTGCCAAGTGTCCCCCCAGCTCAGG
GGCTGTCCATTCCAGTCATTGGTGCAAAGGTTGACCCTACAGCAAAAGCTGTATCCTCCCCAGCTGTGTG
CACCATTCCTACTGTAGTAGGACGGAATGTTATTCCTAGAATCACAACACCCCACAACCCTGTCCAGGGA
CAACCACATCTAAATGGGATATCAAATATTACTAAGAATGTTACACCCAAAAGATCCCATTCGCCACCTA
CAGATGGGACTTCTAAGAGGCTGAAAGACATAGAAAAGTTCATTCGACTTGAGTCAGCATTTAAGGAGTC
CCGGGCTGCCGAGGATCGGAAAAGAAAACCAATGGATTCGATTGGTGGAGAATCTATGCCTATTCCAACT
ATTGATACGGCACGCAAAAAGAGACTACCCAGTAAAGAACTCCCAGATTCATCATCTCCAGTTCCAGCAA
ACAACATCCGTGTCATCAAAAACTCGATCCGCCTGACCCTTAATCGGTAA

Translation (739 aa):
MKEMSANTMLDSQRQQKHYGITSPISLACPKEIDHIYTQKLIDAMKPFGVFEDEEELNHRLVVLGKLNNL
VKEWISDISESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVAPRHVERSDFFQSFFEKLKHQD
GIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISDNLDLRDDSRLRSLDIRCIRSLNGCRVTDEIL
HLVPNKETFRLTLRAVKLWAKRRGIYSNMLGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEW
PNPVLLKQPEESNLNLPVWDPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEI
LQGKSDWSKLLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQSF
PGNKEHHKANNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKDGMKIEATHVKKK
QLHHYLPAEILQKKKKSLSDVSRSSGGLQSKRSSLDSTCLDSSRDTDSGTPFNSPVSANKPSNPDSPTGE
IERSSAEPVAVVVEKLPSVPPAQGLSIPVIGAKVDPTAKAVSSPAVCTIPTVVGRNVIPRITTPHNPVQG
QPHLNGISNITKNVTPKRSHSPPTDGTSKRLKDIEKFIRLESAFKESRAAEDRKRKPMDSIGGESMPIPT
IDTARKKRLPSKELPDSSSPVPANNIRVIKNSIRLTLNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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