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Report for CCDS24155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24155.1 Public Mus musculus 10 Alx1 23 108 98 CCDS HistoryNCBI Gene:216285Re-query CCDS DB by CCDS ID:24155.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24155.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040859.5 ENSMUSP00000042512.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040859.5Link to Ensembl Protein Viewer:ENSMUSP00000042512.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040859Re-query CCDS DB by Protein ID:ENSMUSP00000042512
Original member Current member EBI ENSMUST00000167156.8 ENSMUSP00000129230.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167156.8Link to Ensembl Protein Viewer:ENSMUSP00000129230.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167156Re-query CCDS DB by Protein ID:ENSMUSP00000129230
Original member Current member EBI ENSMUST00000218282.1 ENSMUSP00000151776.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218282.1Link to Ensembl Protein Viewer:ENSMUSP00000151776.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218282Re-query CCDS DB by Protein ID:ENSMUSP00000151776
Original member Current member EBI ENSMUST00000219194.1 ENSMUSP00000152018.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219194.1Link to Ensembl Protein Viewer:ENSMUSP00000152018.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219194Re-query CCDS DB by Protein ID:ENSMUSP00000152018
Original member Current member NCBI NM_172553.4 NP_766141.1 Accepted alive Link to Nucleotide Sequence:NM_172553.4Link to Protein Sequence:NP_766141.1Re-query CCDS DB by Nucleotide ID:NM_172553Re-query CCDS DB by Protein ID:NP_766141Link to BLAST:NP_766141.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766141.1 326 Q8C8B0 326 100% 0 0

Chromosomal Locations for CCDS 24155.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 103009188 103009508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103022177 103022305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103025135 103025439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 103028381 103028606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (981 nt):
ATGGAGTTTCTGAGCGAGAAGTTTGCCCTGAAGAGCCCGCCAAGTAAAAACAGTGACTTTTACATGGGCA
CAGGAGGCGCGTTGGAGCACGTTATGGAGACGCTGGACAATGAGTCCTTTTACGGCAAAGCGACGGCTGG
CAAATGCGTGCAGGCCTTCGGGCCGCTGCCGCGAGCGGAGCATCACGTGCGCCTGGACAGGACTTCGCCC
TGTCAGGACAGCAGCGTGAACTATGGAATCACCAAAGTGGAAGGACAGCCCCTTCACACCGAGCTGAATA
GAGCAATGGATAACTGCAACAATCTCAGGATGTCTCCCGTGAAAGGGATGCCAGAGAAGAGCGAACTGGA
TGAACTTGGGGACAAATGTGACAGCAATGTATCCAGCAGCAAAAAGAGGAGACACCGAACTACCTTTACC
AGTTTGCAGCTGGAGGAACTGGAGAAAGTTTTCCAGAAAACCCATTACCCAGATGTATATGTCAGAGAAC
AACTTGCCCTGAGAACGGAGCTCACTGAGGCCAGGGTCCAGGTTTGGTTTCAAAATCGAAGGGCCAAGTG
GAGAAAAAGAGAACGATACGGCCAAATACAGCAAGCTAAAAGCCATTTCGCTGCCACGTACGACATATCA
GTCTTACCAAGGACGGACAGCTACCCACAGATCCAGAACAATTTGTGGGCAGGAAATGCTAGCGGTGGTT
CTGTGGTTACGTCATGCATGCTACCACGTGACGCGTCCTCCTGCATGACACCTTACTCTCACTCGCCTCG
GACAGATTCCAGTTATACGGGGTTTTCGAACCACCAGAATCAGTTCAGCCACGTGCCCCTCAATAATTTT
TTCACTGACTCTCTTCTCACTGGAGCTACCAACGGACACGCATTTGAAACAAAGCCGGAGTTTGAAAGGA
GGTCTTCCAGTATCGCTGTTCTGAGAATGAAGGCCAAGGAGCACACCGCCAATATTTCATGGGCCATGTA
A

Translation (326 aa):
MEFLSEKFALKSPPSKNSDFYMGTGGALEHVMETLDNESFYGKATAGKCVQAFGPLPRAEHHVRLDRTSP
CQDSSVNYGITKVEGQPLHTELNRAMDNCNNLRMSPVKGMPEKSELDELGDKCDSNVSSSKKRRHRTTFT
SLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYDIS
VLPRTDSYPQIQNNLWAGNASGGSVVTSCMLPRDASSCMTPYSHSPRTDSSYTGFSNHQNQFSHVPLNNF
FTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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