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Report for CCDS24080.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24080.1 Public Mus musculus 10 Ckap4 23 108 98 CCDS HistoryNCBI Gene:216197Re-query CCDS DB by CCDS ID:24080.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24080.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053871.4 ENSMUSP00000050336.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053871.4Link to Ensembl Protein Viewer:ENSMUSP00000050336.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000053871Re-query CCDS DB by Protein ID:ENSMUSP00000050336
Original member Current member EBI ENSMUST00000167671.1 ENSMUSP00000130304.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167671.1Link to Ensembl Protein Viewer:ENSMUSP00000130304.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167671Re-query CCDS DB by Protein ID:ENSMUSP00000130304
Original member Current member NCBI NM_175451.1 NP_780660.1 Accepted alive Link to Nucleotide Sequence:NM_175451.1Link to Protein Sequence:NP_780660.1Re-query CCDS DB by Nucleotide ID:NM_175451Re-query CCDS DB by Protein ID:NP_780660Link to BLAST:NP_780660.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780660.1 575 Q8BMK4 575 100% 0 0

Chromosomal Locations for CCDS 24080.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 84527470 84528777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 84533447 84533866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGCCCTCGGCCAAACAAAGGGGCTCCAAGGGCGGCCACGGCGCCGCGAGCCCCTCGGACAAGGGCGCCC
ACCCGTCGGGCGGCGCGGATGACGTGGCGAAGAAGCCGCCGGCGGCGCCGCAGCAGCCGCAGCCTCCCGC
GCCGCACCCGCCGCAGCACCCGCAGAACCAGGCGCACCGGGGCGGCCACCGCGGCCGGTCCTCAGCCGCC
ACCGCCAACGCGTCCTCCGCGTCCTGCTCGCGCAGGCTTGGCCGGGTGCTCAACTTTCTCTTCTACCTCT
CCCTGGTGGCGGCGGCCGCCTTCTCGGGCTGGTATGTCCATCACGTCCTGGAGGAGGTCCAGCAGGTCCG
GCGTGGCCACCAGGACTTCTCCCGTCAGAGGGATGAGCTGGGCCAGGGCTTGCAGGGCGTCGAGCAGAAG
GTCCAATCCCTGCAAGCCACATTTGGGACTTTCGAGTCCCTCCTGAGAAACTCCCAGCATAAACAGGATC
TCACAGAGAAAGCCGTGAAGGAAGGGGAGAGCGAGCTCAACCGAATTAGCGAAGTTCTACAGAAGTTGCA
GAATGAGATTCTCAAAGATCTGTCGGACGGGATCCACGTGGTGAAGGATGCCCGGGAGCGGGACTTCACG
TCCCTGGAGAACACAGTCGAGGAGCGCCTGACGGAGCTTACCAAGTCTATCAATGACAACATCGCCATCT
TCACTGATGTCCAGAAGAGGAGCCAGAAGGAGATCAATGAGGTCAAGATGAAGGTGGCCTCCCTGGAAGA
ATCCAAGGGGGATCGCAGTCAGGACGTGAAAACTCTGAAGGACGCCGTGAAGGAGGTCCAGGCCTCCATG
ATGTCGAGGGAGAGGGACATTGAGGCCCTGAAGAGTTCCCTTCAGACGATGGAGTCCGACGTCTACACAG
AGGTGCGGGAACTGGTGAGCCTCAAGCAGGAGCAACAGGCGTTCAAGCAGGCGGCCGACTCAGAGCGCCT
GGCTCTGCAGGCCCTCACGGAGAAGCTTCTGCGGTCCGAGGAGTCCTCCTCTCGTCTCCCAGAGGACATC
CGGAGACTGGAGGAAGAGCTACAGCAGCTGAAGGTCGGGGCCCATGGGTCAGAGGAAGGTGCCGTCTTCA
AAGACTCCAAAGCCTTAGAGGAACTGCAGAGGCAGATTGAGGGCCTGGGTGCCAGGCTCCAGTATGTAGA
GGACGGGGTCTACTCAATGCAGGTGGCTTCTGCACGCCACACCGAAAGCCTGGAGTCGCTCCTGTCCAAG
AGCCAGGAGTACGAGCAACGCCTGGCTATGCTGCAGGAGCACGTGGGAAACCTGGGCTCCTCATCTGACC
TGGCCAGCACAGTCAGGAGCCTGGGGGAGACCCAGCTGGCGCTGTCCAGCGACTTGAAGGAGCTGAAGCA
GAGCCTGGGTGAGCTGCCCGGTACCGTGGAGTCACTGCAGGAGCAAGTGCTCTCACTGCTCAGCCAGGAC
CAAGCCCAGGCCGAGGGCTTGCCTCCTCAGGACTTCCTGGACAGACTGTCCTCTCTAGACAACCTGAAAT
CCTCAGTGAGCCAAGTGGAGTCAGACTTGAAAATGCTCAGGACTGCCGTGGACAGTTTGGTGGCCTATTC
CGTCAAAATCGAAACGAATGAGAATAACTTAGAGTCAGCCAAGGGCTTGCTGGATGACCTGCGGAACGAC
CTGGATAGGTTGTTTCTGAAAGTTGAGAAGATCCATGAAAAGATCTAA

Translation (575 aa):
MPSAKQRGSKGGHGAASPSDKGAHPSGGADDVAKKPPAAPQQPQPPAPHPPQHPQNQAHRGGHRGRSSAA
TANASSASCSRRLGRVLNFLFYLSLVAAAAFSGWYVHHVLEEVQQVRRGHQDFSRQRDELGQGLQGVEQK
VQSLQATFGTFESLLRNSQHKQDLTEKAVKEGESELNRISEVLQKLQNEILKDLSDGIHVVKDARERDFT
SLENTVEERLTELTKSINDNIAIFTDVQKRSQKEINEVKMKVASLEESKGDRSQDVKTLKDAVKEVQASM
MSRERDIEALKSSLQTMESDVYTEVRELVSLKQEQQAFKQAADSERLALQALTEKLLRSEESSSRLPEDI
RRLEEELQQLKVGAHGSEEGAVFKDSKALEELQRQIEGLGARLQYVEDGVYSMQVASARHTESLESLLSK
SQEYEQRLAMLQEHVGNLGSSSDLASTVRSLGETQLALSSDLKELKQSLGELPGTVESLQEQVLSLLSQD
QAQAEGLPPQDFLDRLSSLDNLKSSVSQVESDLKMLRTAVDSLVAYSVKIETNENNLESAKGLLDDLRND
LDRLFLKVEKIHEKI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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