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Report for CCDS23775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23775.1 Public Mus musculus 10 Calhm6 23 108 98 CCDS HistoryNCBI Gene:215900Re-query CCDS DB by CCDS ID:23775.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062784.7 ENSMUSP00000051575.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062784.7Link to Ensembl Protein Viewer:ENSMUSP00000051575.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000062784Re-query CCDS DB by Protein ID:ENSMUSP00000051575
Original member Current member NCBI NM_175449.4 NP_780658.2 Accepted alive Link to Nucleotide Sequence:NM_175449.4Link to Protein Sequence:NP_780658.2Re-query CCDS DB by Nucleotide ID:NM_175449Re-query CCDS DB by Protein ID:NP_780658Link to BLAST:NP_780658.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780658.2 313 Q8C9E8 313 100% 0 0

Chromosomal Locations for CCDS 23775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 34126144 34126566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 34127391 34127909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAAAAGTTCAAGGCAGTGCTGGACCTGCAGAGAAAGCACCGCAACGCCCTGGGCTATAGCCTGGTGA
CCCTACTGACGGCTGGTGGGGAGAAGATCTTCTCCTCAGTGGTGTTCCAGTGTCCCTGCACTGCCACCTG
GAACCTGCCCTACGGCCTGGTGTTCCTGCTGGTGCCTGCCCTCGCGCTTTTCCTCCTGGGATATGCGCTG
AGCGCGCGCACATGGCGCCTGCTCACCGGCTGCTGCTCCCGGAGCGCGCGATTCAGTTCGGGGTTGCGCA
GCGCGTTCGTGTGCGCCCAGCTCAGCATGACCGCGGCATTCGCGCCCCTCACCTGGGTGGCCGTGGCGCT
GCTCGAGGGCTCTTTCTACCAATGTGCTGTCAGCGGGAGCGCGCGCTTGGCGCCATACCTGTGCAAGGGC
CGCGACCCCAACTGCAATGCCACGCTACCGCAGGCTCCCTGCAACAAGCAGAAGGTGGAAATGCAGGAGA
TCCTGAGCCAGCTCAAGGCTCAGTCTCAGGTGTTCGGTTGGATTCTGATAGCTGCCGTTATTATCTTACT
TCTTCTTGTTAAGTCTGTGACCCGATGCTTCTCTCCGGTTAGTTATCTGCAGTTAAAATTCTGGGAAATC
TATTGGGAAAAGGAGAAGCAGATTCTTCAAAATCAAGCTGCAGAGAATGCGACACAGTTGGCCGAAGAGA
ATGTTAGATGTTTCTTTGAGTGCTCGAAGCCGAAGGAATGCAACACTCCAAGCAGTAAAGACTGGCAGGA
AATCTCAGCGTTGTACACATTCAATCCCAAGAACCAGTTCTACAGCATGCTGCACAAGTATGTTAGCAGA
GAAGAAATGAGCGGCAGTGTCCGCTCTGTGGAAGGAGATGCAGTGATCCCTGCCCTTGGCTTTGTAGATG
ACATGTCCATGACTAACACTCACGAACTATGA

Translation (313 aa):
MEKFKAVLDLQRKHRNALGYSLVTLLTAGGEKIFSSVVFQCPCTATWNLPYGLVFLLVPALALFLLGYAL
SARTWRLLTGCCSRSARFSSGLRSAFVCAQLSMTAAFAPLTWVAVALLEGSFYQCAVSGSARLAPYLCKG
RDPNCNATLPQAPCNKQKVEMQEILSQLKAQSQVFGWILIAAVIILLLLVKSVTRCFSPVSYLQLKFWEI
YWEKEKQILQNQAAENATQLAEENVRCFFECSKPKECNTPSSKDWQEISALYTFNPKNQFYSMLHKYVSR
EEMSGSVRSVEGDAVIPALGFVDDMSMTNTHEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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