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Report for CCDS56647.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56647.1 Public Mus musculus 1 Tdrd5 23 108 98 CCDS HistoryNCBI Gene:214575Re-query CCDS DB by CCDS ID:56647.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56647.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121146.9 ENSMUSP00000137298.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121146.9Link to Ensembl Protein Viewer:ENSMUSP00000137298.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121146Re-query CCDS DB by Protein ID:ENSMUSP00000137298
Original member Current member NCBI NM_001134741.1 NP_001128213.1 Accepted alive Link to Nucleotide Sequence:NM_001134741.1Link to Protein Sequence:NP_001128213.1Re-query CCDS DB by Nucleotide ID:NM_001134741Re-query CCDS DB by Protein ID:NP_001128213Link to BLAST:NP_001128213.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128213.1 1040 Q5VCS6-1 1040 100% 0 0

Chromosomal Locations for CCDS 56647.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156255574 156255845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156259731 156259935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156262829 156262972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156263406 156263588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156267213 156267371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156270566 156270700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156271199 156271399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156276562 156276628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156277298 156277510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156284265 156284485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156285386 156285594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156288228 156288381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156293327 156293383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156294435 156294518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156300597 156300790 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156301514 156301906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156302367 156302598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3123 nt):
ATGTCTGAACAAGAGCGTATACAGGACTGTCTGAGGAAAGAGATAAGGTCCCTTCTTATTTCCACTAAGG
ATGGTTTGACTCCACAACAGTTGGAAAAGGAGTACCTTTTGATGGTTGGCAACCATCTCCCGCTCCGAAT
CCTTGGATATCGGTCCACTATGGAACTGGTGTTGGATATGCCCGATGTGGTTAGTGTCTGCCCCGGTGGG
GATGGTACCGTAATACTGAAAGCCATTCCAGACGAATCCACCAAAGGAATAGCAAGTTTGGTTGCAAAGC
AGAGAAGGAGCCATAAGGTCCGAAACTCCATGCCAAAGGGAAGACCCAGCATATGCTCTGGCCGGGTGCC
TTACCGAGGAAGGGTGCCCCCAATTCTTCCAGCTGTAGTGAAGAGTGAGTTGAAAGACCTTTTGGCATTG
TCTCCCGTTCTCCTTTCTGACTTTGAAAAGGCATTTGCCAGGCGTTTTGGACGATCATTTCAGTATATGC
AGTATGGATTCCTCTCTATGTTTGAAGTGCTGAATGCAGCTTCGGATGTCATTTCTGTAGAGCAGACCAG
AGCAGGTTCTCTGTTGACACTAAAAAAGAGTGTATCAGAGGACAAGCAGAGAGGATGGCCAGCAGGTAAA
GTTTTTACTCAGCCATTTAGAATGAAACAACAGGGGTCATATTCTACAGGATTCCCAGTAATGAAGGCAC
ACTTTTCACAACCCATTTCAAATATGGAGCCCCCCAAACAAGTACTGAGCATGGCGAAGACACCCACGTT
TAATTCTGTGGAGGCTTCAAGGCTGAACCACACTGAAAAATTAAATCAGTTGGAGAGCACATTCAAATCC
GTGATTGCACAGATTGGACCTGGAGGGACTGTTGATCCTGAGCTAAAGCGCAAGATACAATTTGTCGTGT
CTAAGTTTCCACAAGGTTTGTTTATTTCTAAACTGCTTGGAGAATTTGAGCTAACTTTTAAAGAGCAACT
TTCACCAAAACAATTAGGGTTCTTAAACGTGACAGAACTTGTTGGCGCTCTTAGTGACATTCTCCGAGTT
GAGTTCAGTGAAGAAAGGCAAGACTTGCTCGTGTTTGATGCTGACCTGAAGCCTCTGCCGTCTGGTGGAC
CGCTTTCATCAGTCAGAAATTCGTGTTTAGTTCAACCAGACAAGAAAACAGAAGCTAACCCTTGGACTTC
CAGTCTCTCCAGAAATTCACTATCCACTGTAGCAGTTAAGAAGACCACGTGGGATTGCCCTTTGAAGAAC
CAGAAGGAGCCAGAACAGAAGATATACAAGAAGCCTAATCTGGTGGTCAAGCCTCTGCAGCTGCAGGTAG
AAACAAACAAACCGCAGCTCAGCCTGTCAGTGGCAAACCACGATATCCCACCAGACGCTGTGCGTGCCAA
GAAATTGTGCAGACTTCCTCCATTAGATACCAGCACCCTTGTGGGGGTCTTCGTGGAGTATATAATCTCC
CCTAGTCAGTTCTACATCCGGATCTACAGCAGAGATTCCTCAGAACTACTTGAAGACATGATGATTGAAA
TGCGACGCTGCTACTCCAACCAGCTGGTCTCTGACCGGTACATTATGCCAGAATATTTTATACAACCAGG
ACATCTCTGTTGTGTAAAGATCTCTGAGGACAAGTGGTGGTACCGGGTTATTATCCATCGGATCCTTGGG
AAAAAGGAAGTGGAAGTGTTCTACCCAGATTTCGGAAATATCGGAACTGTGCAGAAGTCCTCGCTGAGGT
TCCTCAAATGCTGCTACACAAAGCTTCCAGCTCAGGCTATCCCTTGCTCTTTGGCGTGGGTGAGGCCCGC
AGAGGAACACTGGACAGCCAGAGCTATTTTGCACTTCCAGAAGCTGTGTGGTTTGAAGCCATTGGTGGGG
GTGGTGGATGAGTATATAGACGGAATCCTTAATATTTTTCTTTGTGATACGTCCTCAAATGAAGATGTGT
ATTTTCATCATGTCTTGAGGACAGAAGGCCATGCTATTGTATGCCGAGAAAATGCCCCATCCAAGGGCTT
CAGGGATTTCAACCCACCAGCTCTGTACACTAACGCCAGCTCAGCGGGCGACATGGTCCTGACAGACCTG
GGGCATCCTGCTCAGCAGCACTATTTAAATGAAGACCAGGAGATACTGCAGCAAGCCCAGCAAGATATTA
ATGATGGAAAGTGTATAAGTTACCTTAAATCTGCGCCCAAGGAATTATTAAAGGATTCTAAATTGAGCTC
ATTGAAAACACATAAGAGCTGTGAAGAGGACCCACGGTGGTCCATCCTGCAGCCCAAGGATCTGAAGGAA
GAAAATGAGGATGAGGTCCCTACTGGAATGCCATGCCTGGAGTCAGTGACCATAGGTGACGATGTTTGGG
ATGAGAACTGGCTCCCTCTACAGGCCAAAATGGGGAAGGCAGGGAGTCCTGCCTCCCAGCTGTTTACTTC
AAACCTTGTTGGGAAGAAACAATATCAGACAGGTGGAGAAATGGCACAAAAGGACTGGTGTTTTTCTACA
TCTAAAGATATATGGGATGATTCCTGGCAGCCCTTAGGCCTTGCGAATGATGTGAAAGGAGGAATTCACA
CACCAGAAGGGCCCATTGCTCAAGAAAAAAATACCAGCACAACCCGAATTCAACAGCAGCCAGATTTACA
GTATCCTTTGGATTCTTCCACACTGCCCAAACTGGAAGAGTTCTACATCTCTCTGATCAAGTCTCAGCAG
TCCGCAGAGAGGAGCCAGTCTGAACCTGCCAGCATTCAGACTCATGCCGGACGGGCAGCCTCAAAAGCAC
TCAGTTCAACCCCTGCAGTGGGTGACTCTCCAGAAAACCACTCTGGCTCTGTGGAAAGCTCTCCAGGGAG
CCTAAAGAAAGAAGATGTTTCTAATAGCCGTGCTGAAGCCACGGCCAAGGACAAGAGTCAGGGAGCCATA
GACCAGCTCTCTTTCATTTTGTCCCCCCAGCACCAGATTTCTCAGAAGCTCTACATCCCTCGAAGTACAG
CCACAGCTGTCTTGGGAGCTGCGGCACGGTTAGCCACGTCCAGGAGCCTCCTGCACTGGTACCCCAGTGT
GAAAGGAGGGAAGCTTGAGGCAGAGAGAGATGGAGTGAAGTAA

Translation (1040 aa):
MSEQERIQDCLRKEIRSLLISTKDGLTPQQLEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVVSVCPGG
DGTVILKAIPDESTKGIASLVAKQRRSHKVRNSMPKGRPSICSGRVPYRGRVPPILPAVVKSELKDLLAL
SPVLLSDFEKAFARRFGRSFQYMQYGFLSMFEVLNAASDVISVEQTRAGSLLTLKKSVSEDKQRGWPAGK
VFTQPFRMKQQGSYSTGFPVMKAHFSQPISNMEPPKQVLSMAKTPTFNSVEASRLNHTEKLNQLESTFKS
VIAQIGPGGTVDPELKRKIQFVVSKFPQGLFISKLLGEFELTFKEQLSPKQLGFLNVTELVGALSDILRV
EFSEERQDLLVFDADLKPLPSGGPLSSVRNSCLVQPDKKTEANPWTSSLSRNSLSTVAVKKTTWDCPLKN
QKEPEQKIYKKPNLVVKPLQLQVETNKPQLSLSVANHDIPPDAVRAKKLCRLPPLDTSTLVGVFVEYIIS
PSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYIMPEYFIQPGHLCCVKISEDKWWYRVIIHRILG
KKEVEVFYPDFGNIGTVQKSSLRFLKCCYTKLPAQAIPCSLAWVRPAEEHWTARAILHFQKLCGLKPLVG
VVDEYIDGILNIFLCDTSSNEDVYFHHVLRTEGHAIVCRENAPSKGFRDFNPPALYTNASSAGDMVLTDL
GHPAQQHYLNEDQEILQQAQQDINDGKCISYLKSAPKELLKDSKLSSLKTHKSCEEDPRWSILQPKDLKE
ENEDEVPTGMPCLESVTIGDDVWDENWLPLQAKMGKAGSPASQLFTSNLVGKKQYQTGGEMAQKDWCFST
SKDIWDDSWQPLGLANDVKGGIHTPEGPIAQEKNTSTTRIQQQPDLQYPLDSSTLPKLEEFYISLIKSQQ
SAERSQSEPASIQTHAGRAASKALSSTPAVGDSPENHSGSVESSPGSLKKEDVSNSRAEATAKDKSQGAI
DQLSFILSPQHQISQKLYIPRSTATAVLGAAARLATSRSLLHWYPSVKGGKLEAERDGVK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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