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Report for CCDS24570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24570.1 Public Mus musculus 11 Sox30 23 108 98 CCDS HistoryNCBI Gene:214105Re-query CCDS DB by CCDS ID:24570.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049038.3 ENSMUSP00000037519.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049038.3Link to Ensembl Protein Viewer:ENSMUSP00000037519.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000049038Re-query CCDS DB by Protein ID:ENSMUSP00000037519
Original member NCBI NM_173384.2 NP_775560.1 Updated not alive Link to Nucleotide Sequence:NM_173384.2Link to Protein Sequence:NP_775560.1Re-query CCDS DB by Nucleotide ID:NM_173384Re-query CCDS DB by Protein ID:NP_775560
Current member NCBI NM_173384.3 NP_775560.1 Accepted alive Link to Nucleotide Sequence:NM_173384.3Link to Protein Sequence:NP_775560.1Re-query CCDS DB by Nucleotide ID:NM_173384Re-query CCDS DB by Protein ID:NP_775560Link to BLAST:NP_775560.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775560.1 782 Q8CGW4 782 100% 0 0

Chromosomal Locations for CCDS 24570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 45980320 45981373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45983319 45983558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45984717 45984896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 45991619 45992111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46016975 46017356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2349 nt):
ATGGAGAGAGCCAGGCCGGAGCCACCGCCGCCACCGCCGCCGCCGCCGCGCCAACCGCCGCGGCCCACCC
CTCCGCGCCCGTTGCGCCCCGCTCCGCCCGCGCAGCCCGTCGAGGCCGCCACCTTCCGGGCCGCGGCCGC
AGAGCGCTCCCAGTCGCCGTCGGCTCAGGCCACGGCCGCCATGGCCGCGGTGGCCTCGTCGTGCGGGGAG
GCCGCGGCGGCGGGTGCGCAGGCGGCAGGGACGCGACGCCTGCTGCAAGTGAAGCCGGAACAGGTGCTGC
TGCTGCCTCCCGGAGGACCGGGGGTGCCTCCGGCTCCCGACGAGGGCGCAGCCGCCGCCGCCGCTGCCGC
TGCCGCCGCCGCCTCGTCCGCGCAGGCGCGCCTGCTGCAGCTGAGGCCGGAGCTGCTGCTGTTGCCTCCG
CAGTCCGCGGCCGACGGAGGCCCCTGCAGGCCGGAGCTGCACCCCATGCAGCCCCGGACGCTGCTCGTCA
AGGCCGAGAAGCAAGAGCTGGGGGCGGGCTTGGACCTGTCGGTGGGATCTCGGAGGACCACCGAGGCCGG
CCCGAGAGCCTCGAGGGCCGCCAAGTTGGATGGCACCGGGAAGGCCCTCGACGGCCGCCGAAGCGATGAG
AAGAAAGCCAAGCTGGAGGCAGAGGAGGCTCCGAGGGATGCGCTGAAAGGCGGGGAAGGCAAGAGCCTGC
TGGCCATCGGAGAAGGAGTCATCAAGACGGAGGAGCCAGACAGACCCAGGGACGATTGTAGGCTGGGCAC
GGAGGCCACGTCCAATGGCCTGGTCCACAGCAGCAAGGAGGCCATCCTGGCCCAGCCGCCTAGTGCTTTT
GGGCCACACCAGCAAGACCTAAGGTTCCCTTTGACACTCCACACCGTCCCACCTGGAGCCCGTATCCAGT
TTCAGGGGCCTCCGCCTTCTGAGTTGATACGGTTGTCCAAAGTCCCCCTGACACCAGTGCCTATTAAAAT
GCAGTCCTTGCTGGAGCCTTCTGTAAAAATTGAAACCAAAGATGTCCCCCTCACCGTGCTGCCCTCAGAT
GCAGGAATACCTGATACTCCCTTCAGTAAGGACAGAAATGGTCATGTGAAGCGACCCATGAATGCATTTA
TGGTTTGGGCAAGAATCCACCGGCCAGCACTAGCCAAAGCTAACCCAGCCGCCAACAATGCAGAAATCAG
TGTCCAGCTCGGGTTAGAGTGGAACAAACTTAGTGAAGAACAAAAGAAACCTTATTATGATGAAGCACAA
AAGATTAAAGAGAAGCACAGAGAGGAGTTTCCTGGTTGGGTTTATCAGCCTCGTCCAGGGAAGCGAAAAC
GCTTCCCTCTAAGTGTTTCCAATGTATTTTCTGGTACCACACAGAATATTATCTCTACAAATCCTACAAC
AATTTATCCTTATCGCTCACCTACCTACTCTGTGGTAATTCCCGGCCTTCAGAACACCATCACTCATCCA
GTTGGTGAAGCCCCTCCTGCCATCCAGCTGCCCACACCTGCAGTCCAGCGCCCAAGTCCCATCACACTTT
TCCAGCCCAGCGTCTCCAGCACTGGCCCAGTGGCCGTCCCGCCTCCAAGCCTGACGCCCCGCCCATCACT
CCCACCTCAGCGCTTTTCTGGGCCTTCCCAAACTGACATTCATAGGCTCCCTTCGGGAAGCAGTCGCTCT
GTGAAGAGATCCACTCCAGGCTCTCTGGAGAGCACCACCAGGATTCCAGCTGGTGCAAGTACTGCCCATG
CCAGATTTGCAACCTCGCCTATCCAGCCTCCTAAGGAGTATGCCAGCGTTTCCACTTGTCCCCGAAGCAC
TCCGATACCCCCGGCGACTCCCATTCCACACTCACACGTCTATCAGCCCCCACCCCTTGGCCATCCAGCC
ACACTGTTTGGGACACCACCTCGGTTCTCCTTTCATCACCCTTACTTCCTACCTGGACCTCATTACTTCC
CGTCAAGCACGTGCCCTTATAGTCGGCCTCCCTTTGGCTATGGAAATTTTCCAAGTTCAATGCCAGAATG
TCTTGGTTACTATGAAGACAGATACCAAAAACATGAGGCTATCTTTTCAGCTTTAAATAGAGACTATCCT
TTCAGAGACTATCCAGATGAGCACACACACAGTGAAGACTCTCGGAGCTGTGAGAGCATGGACGGGCCCC
CTTACTACAGCAGCCATGGCCACGGTGGGGAAGAGTACTTGAATGCCATGCCCACTCTGGACATTGGAGC
CTTGGAGAATGTCTTCACAGCCCCAGCCTCAGCCCCCTCTGGTGTCCAGCAAGTCAATGTCACTGACAGC
GACGAGGAGGAAGAAGAAAAAGTGCTCAGGAATTTATAG

Translation (782 aa):
MERARPEPPPPPPPPPRQPPRPTPPRPLRPAPPAQPVEAATFRAAAAERSQSPSAQATAAMAAVASSCGE
AAAAGAQAAGTRRLLQVKPEQVLLLPPGGPGVPPAPDEGAAAAAAAAAAAASSAQARLLQLRPELLLLPP
QSAADGGPCRPELHPMQPRTLLVKAEKQELGAGLDLSVGSRRTTEAGPRASRAAKLDGTGKALDGRRSDE
KKAKLEAEEAPRDALKGGEGKSLLAIGEGVIKTEEPDRPRDDCRLGTEATSNGLVHSSKEAILAQPPSAF
GPHQQDLRFPLTLHTVPPGARIQFQGPPPSELIRLSKVPLTPVPIKMQSLLEPSVKIETKDVPLTVLPSD
AGIPDTPFSKDRNGHVKRPMNAFMVWARIHRPALAKANPAANNAEISVQLGLEWNKLSEEQKKPYYDEAQ
KIKEKHREEFPGWVYQPRPGKRKRFPLSVSNVFSGTTQNIISTNPTTIYPYRSPTYSVVIPGLQNTITHP
VGEAPPAIQLPTPAVQRPSPITLFQPSVSSTGPVAVPPPSLTPRPSLPPQRFSGPSQTDIHRLPSGSSRS
VKRSTPGSLESTTRIPAGASTAHARFATSPIQPPKEYASVSTCPRSTPIPPATPIPHSHVYQPPPLGHPA
TLFGTPPRFSFHHPYFLPGPHYFPSSTCPYSRPPFGYGNFPSSMPECLGYYEDRYQKHEAIFSALNRDYP
FRDYPDEHTHSEDSRSCESMDGPPYYSSHGHGGEEYLNAMPTLDIGALENVFTAPASAPSGVQQVNVTDS
DEEEEEKVLRNL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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