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Report for CCDS20471.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20471.1 Public Mus musculus 6 Bms1 23 108 98 CCDS HistoryNCBI Gene:213895Re-query CCDS DB by CCDS ID:20471.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20471.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032237.7 ENSMUSP00000032237.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032237.7Link to Ensembl Protein Viewer:ENSMUSP00000032237.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000032237Re-query CCDS DB by Protein ID:ENSMUSP00000032237
Original member NCBI NM_194339.1 NP_919320.1 Updated not alive Link to Nucleotide Sequence:NM_194339.1Link to Protein Sequence:NP_919320.1Re-query CCDS DB by Nucleotide ID:NM_194339Re-query CCDS DB by Protein ID:NP_919320
Current member NCBI NM_194339.2 NP_919320.1 Accepted alive Link to Nucleotide Sequence:NM_194339.2Link to Protein Sequence:NP_919320.1Re-query CCDS DB by Nucleotide ID:NM_194339Re-query CCDS DB by Protein ID:NP_919320Link to BLAST:NP_919320.1

Chromosomal Locations for CCDS 20471.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 118383651 118383875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118384239 118384400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118388756 118388931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118389239 118389386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118391158 118391280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118392318 118392376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118392544 118392724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118392803 118392991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118396127 118396306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118396763 118396836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118398074 118398155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118403089 118403246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118404256 118404357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118404580 118405340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118408011 118408150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118411482 118411675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118411955 118412076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118413079 118413221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118413731 118413919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118416463 118416542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118417388 118417578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 118418409 118418584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3855 nt):
ATGGAGACCAAGGACCACAAGAAACATAGGAAGAAGCACAGTGGGCCTAAAGCTGAGAAGAAAAAGAAAC
GGCACCTGCAAGACCTACAGCTTGGAGATGAAGAGGATGCCCGGAAGAGAAACCCCAAAGCTTTCGCAGT
GCAGTCAGCTGTGCGGATGGCGAGGTCCTTTCACAGGACTCAGGACTTAAAGACGAAAAAGCATCACATT
CCAGTGGTTGACAGAACTCCACTGGAGCCCCCACCAATAGTGGTAGTGGTGATGGGACCTCCAAAAGTTG
GAAAGAGCACTTTGATACGATGCCTGATTCGGAATTTTACCAGACAGAAATTGAGTGAGATCAGAGGCCC
TGTGACAATTGTGTCAGGTAAAAAGCGCAGACTTACAATTATTGAGTGTGGGTGTGACATCAATGTAATG
ATTGATCTAGCTAAAGTAGCAGATCTGGTGCTAATGCTTATAGATGCCAGCTTTGGGTTTGAGATGGAGA
CATTTGAGTTTCTAAACATCTGTCAAGTACATGGCTTTCCTAAAATTATGGGAGTTCTCACCCATTTGGA
CTCCTTCAAGCATAACAAGCAACTTAAGAAGACAAAGAAGCGTTTAAAGCACAGATTCTGGACAGAAGTC
TACCCGGGCGCCAAGCTATTCTACCTTTCTGGAATGGTGCATGGAGAGTATCAGAACCAAGAGATTCACA
ACCTGGGCCGGTTTATTACAGTTATGAAGTTTAGGCCTCTCACATGGCAGACTTCTCATCCTTACATCTT
GGCAGACAGGATGGAAGACTTGACAAATCCTGAGGCTATCCGCACAAACGTCAAGTGTGACCGAAAGGTG
TCTCTTTATGGTTATTTACGAGGGGCCTACCTGAAAAATAACAGCCAGATCCACATGCCAGGCGTGGGGG
ATTTTGTCGCCAGTGATGTCAGTTTTCTCCCAGACCCCTGCGCTCTTCCGGAACAGCAGAAGAAGCGCTG
TTTGAATGAGAAGGAGAAACTGGTTTACGCGCCTCTCTCTGGGGTTGGGGGTGTGCTGTACGACAAAGAT
GCTGTCTATGTCGACCTAGGTGGCAGCCATGGCTTCCAGGCAGCGGAAGAAACAGGCCCTACGCATGAAC
TGGTCCAGAGCCTCATCTCCACCCATGCCAGTATCGATGCTAAGATGGCTTCAAGTAGAGTGACACTTTT
CTCTGATTCCAAACCTCTGGGGTCAGAAGACATAGATAATCAAGGGCTGTGGATGCCGAAAGAGGAAAAG
CAGGTGGATGTGGAAACGGGCCGAGTGCGTCGGAAAGCCATTTTTGGAGATACAGAAGATGAGTCTGGAG
ATGAAGAGAGTGAAGATGAAGAAGACATGTCTGAAGCTGACGGGATGGAACCTGGCTCTAGTGATGATGA
GGCGGAAGAGGCAGAGGAAGAAGGTGCTGAGAGCAGCAGCGGTAACTACATGATGGGTAGGGGACGCAAA
CGACCAAAGCTTGAGGAGCAGGAGGAAGACAGTGAGGCAGACTCGCCAGCGTTTGCTGATAGCGATGATG
ACCTTGAGAGGAGCTCTGGGGGCGAGGAGGAGGCCGAGGAGGCGGATGAAAGCAGTGCTGACGGTGCCTC
CACAGGGGAGAGGGACGCTGGGGAATGCGGCTCTGTTGGAGAAGCTAGTGAGGAGAGCCCGTCAGCAGCC
CACCAGTGGAGGCCCCATGCGGATGCACAGAAGCCCTCCCCGGTGAGAAAAGCAGCCCTCACCACTTCTG
ACTCTGGCCACTGTACAGCCGAGGAGGCGTTTCCATCTGAGGATGAGTCTGAGGACTCTGAGCTCAGTGC
AGAGGAAGAAGACTCCGACCACAGAGAGGTTAGGGGGAAGCTTGCACACCCTCTGCGCGACAGCGGACAG
AAACCTGCCTCGGAGAGCCTGGTTGATGAGACCAGCGACATTGAAAGTTTACTCAAAGAGGAGGAAGAGT
ACAAGGAGGACAATAGCAGCTCTGTAGAAACGTCAGGTGCTCTGAAGTGGAAGGAAGACCTTTCCAGAAA
AGCAGCAGAGGCCTTTCTCAGGCAGCAGCAAGCAGCTCCGAATCTTCGAAAGCTGATTTATGGGACAGTG
ACAGAGGATAATGAAGATGAAGATGGAGACCCCGCAGAAGAGCTTGGAGGGCTGTTTCATGTCAGCCAGC
CAGATAGAGGGTGCAAGCACAAGGCTGACTCTCTGGACTGCTCCAGATTCCCTGTGGAGGCTCCTCACGA
CTGGGATTTAGAGGAGGTTATGAACAGTATCAGAGACTGCTTTGTGACTGGGAAATGGGAAGATGATAAA
GATGCAGCCAAGATCTTAGCAGAGGAAGAGGAGCTCTATGGTGACTTTGAAGACCTAGAAACGGGGGACG
TGCACAAAGGAAAACCAGGCCCGGATACTCAGAGTGAAGACATAGAGGAAGAAGAAGTGAAGGAAGAAAC
TGACCCAAGTGAGGAGGAAAGTGCTAGGAAAAAGCATCTGGATAAGAAGAGAAAGCTGAAGGAGCTGTTT
GATGCAGAGTATGATGAAGGAGAAAGCACCTACTTTGATGATCTTAAGGGGGAAATGCAGAGACAAGCGC
AGCTTAACCAGGCTGAATTTGAAGATCAAGAAGATGAAACCAGAGTTCAGTATGAGGGGTTTCGACCTGG
AATGTATGTTCGAATTGAGATCGAAAACATCCCTTGTGAATTTGTGCAGAACTTTGACCCACACTACCCA
ATTATTCTGGGTGGTTTGGGCAATAGCGAGGGCACTGTGGGGTATGTGCAGATGCGCATCAAGAAACATC
GTTGGTATAAGAAAATCCTCAAGTCTCGAGACCCCATTATTTTTTCTGTAGGATGGAGGAGATTTCAGAC
CATCCCATTGTATTACATTGAAGACCACAATGGAAGACAAAGGCTTCTAAAATACACCCCACAACACATG
CATTGTGGAGCAACTTTTTGGGGTCCTATCACTCCACAAGGAACTGGATTTTTGGCGATACAGTCTGTCA
GTGGTGTAATGCCTGAGTTTCGGATTGCTGCCACTGGAGTTGTCCTTGACCTGGATAAATCCATAAAAAT
TGTGAAGAAATTAAAACTAACTGGTTTTCCTTTTAAAATATTCAAGAATACTTCATTTATTAAGGGAATG
TTTAATTCTGCATTGGAAGTAGCCAAATTTGAAGGTGCTGTCATTCGAACTGTCAGTGGAATAAGGGGAC
AGATCAAGAAAGCACTCCGGGCTCCCGAAGGAGCCTTCCGCGCTAGCTTTGAGGACAAGTTGCTAATGAG
TGATATTGTTTTCATGCGAACTTGGTACCCTGTCTCCATTCCGGCCTTCTACAATCCAGTAACATCTTTG
TTGAAACCAGTGGGTGAGAAGGATACCTGGTCAGGGATGCGGACAACACATCAGCTGAGGCTTGCCCATG
GAATCAAGTTAAAGGCAAACAAGGATTCCTTGTATAAGCCAATCCTGAGACAAAAGAAACATTTTAATTC
ACTGCACATTCCCAAAGCCTTGCAGAAGGCTCTGCCATTTAAGAACAAACCCAAGACTCAAGCAAAGGCA
GGCAAAGTGCCGAGGGACAGGCAGAGACCGGCCGTCATACGTGAACCTCATGAGAGGAAGGTCCTGGCTC
TGCTAGATGCTCTGAGCACAATACACAGTCAGAAAATGAAAAAGGCCAAAGAGCAGAGACGCCTGCACAA
CAAGGAGCATGTGAAGATGAAGCAGAAGGAGGAAGAGGACAAGCTGAGGCGGCAGAAGGACCTGAGGAAG
AAGCTCTTCCGGATGCAGGGTCAGAAGGAAAAACGAAGTCAGAAGTCTAGTCTGAGAGGAGCTGAGGATA
CCTGA

Translation (1284 aa):
METKDHKKHRKKHSGPKAEKKKKRHLQDLQLGDEEDARKRNPKAFAVQSAVRMARSFHRTQDLKTKKHHI
PVVDRTPLEPPPIVVVVMGPPKVGKSTLIRCLIRNFTRQKLSEIRGPVTIVSGKKRRLTIIECGCDINVM
IDLAKVADLVLMLIDASFGFEMETFEFLNICQVHGFPKIMGVLTHLDSFKHNKQLKKTKKRLKHRFWTEV
YPGAKLFYLSGMVHGEYQNQEIHNLGRFITVMKFRPLTWQTSHPYILADRMEDLTNPEAIRTNVKCDRKV
SLYGYLRGAYLKNNSQIHMPGVGDFVASDVSFLPDPCALPEQQKKRCLNEKEKLVYAPLSGVGGVLYDKD
AVYVDLGGSHGFQAAEETGPTHELVQSLISTHASIDAKMASSRVTLFSDSKPLGSEDIDNQGLWMPKEEK
QVDVETGRVRRKAIFGDTEDESGDEESEDEEDMSEADGMEPGSSDDEAEEAEEEGAESSSGNYMMGRGRK
RPKLEEQEEDSEADSPAFADSDDDLERSSGGEEEAEEADESSADGASTGERDAGECGSVGEASEESPSAA
HQWRPHADAQKPSPVRKAALTTSDSGHCTAEEAFPSEDESEDSELSAEEEDSDHREVRGKLAHPLRDSGQ
KPASESLVDETSDIESLLKEEEEYKEDNSSSVETSGALKWKEDLSRKAAEAFLRQQQAAPNLRKLIYGTV
TEDNEDEDGDPAEELGGLFHVSQPDRGCKHKADSLDCSRFPVEAPHDWDLEEVMNSIRDCFVTGKWEDDK
DAAKILAEEEELYGDFEDLETGDVHKGKPGPDTQSEDIEEEEVKEETDPSEEESARKKHLDKKRKLKELF
DAEYDEGESTYFDDLKGEMQRQAQLNQAEFEDQEDETRVQYEGFRPGMYVRIEIENIPCEFVQNFDPHYP
IILGGLGNSEGTVGYVQMRIKKHRWYKKILKSRDPIIFSVGWRRFQTIPLYYIEDHNGRQRLLKYTPQHM
HCGATFWGPITPQGTGFLAIQSVSGVMPEFRIAATGVVLDLDKSIKIVKKLKLTGFPFKIFKNTSFIKGM
FNSALEVAKFEGAVIRTVSGIRGQIKKALRAPEGAFRASFEDKLLMSDIVFMRTWYPVSIPAFYNPVTSL
LKPVGEKDTWSGMRTTHQLRLAHGIKLKANKDSLYKPILRQKKHFNSLHIPKALQKALPFKNKPKTQAKA
GKVPRDRQRPAVIREPHERKVLALLDALSTIHSQKMKKAKEQRRLHNKEHVKMKQKEEEDKLRRQKDLRK
KLFRMQGQKEKRSQKSSLRGAEDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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