NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20460.1 Public Mus musculus 6 Rassf4 23 108 98 CCDS HistoryNCBI Gene:213391Re-query CCDS DB by CCDS ID:20460.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035842.6 ENSMUSP00000048267.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035842.6Link to Ensembl Protein Viewer:ENSMUSP00000048267.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000035842Re-query CCDS DB by Protein ID:ENSMUSP00000048267
Original member Current member NCBI NM_178045.4 NP_835146.3 Accepted alive Link to Nucleotide Sequence:NM_178045.4Link to Protein Sequence:NP_835146.3Re-query CCDS DB by Nucleotide ID:NM_178045Re-query CCDS DB by Protein ID:NP_835146Link to BLAST:NP_835146.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835146.3 322 Q8CB96-1 322 100% 0 0

Chromosomal Locations for CCDS 20460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116638238 116638298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116639441 116639538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116640233 116640354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116641428 116641479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116641685 116641786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116645096 116645256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116645886 116645977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116647567 116647709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116659525 116659600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116661843 116661904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGAAGGAAGCTTGCTCTTCCAGCTCTCATGTTCCTGTCAGCGACAGCAAGTACATTCTGAAGTCAGAAC
TCTTAAGCCTGCTCAAAACCTACAACTGCTACCATGAAGGCAGGAGCTTTCAGCTAAGACACCGAGAGGA
AGAAGGGACTCTGATCATCGAAGGACTCCTCAACATTGCCTGGGGACTCAGACGACCCATCCGGCTGCAG
ATGCAGGATGATCGGGAGCGAGTGCACCTGCCGTCTGCCACATGGGTGCCTGAGAGGCTCAGCTACCTCC
AAAAGGAAGCTTCACCCCAGGACAGCAAGGTCCCCACTGAAGAGCCTGGCACTCAACCTGCAAACAAGGC
AGAGGTTTCCGGAGATAGCTCAGGAGCCCTGGAGGGGGAAGAGGAGGAGGTCCCACAGCTTATGCGGACA
AAGAGCGATGCCAGCTGCATAATCCAGAGGAGGTCCAAATCCCGGGCACCAAGCGAAGCCCAGAAGATAC
GACGGCACCGGTTCTCCATCAATGGACATTTTTATAACCACAAGACCTCAGTGTTCACTCCTGCCTATGG
GTCTGTGACCAACGTCCGGGTTAACAGCACTATGACCACCCAGCAGGTGCTCACCCTGCTACTAAACAAG
TTCCGGGTAGAAGATGGTCCCAGTGAGTTTGCACTCTACACCGTCCATGAGTCTGGGGAGCAGACAAAAT
TAAAAGATTGCGAGTACCCACTGATATCCAGAATCCTGCATGGGCCCTGTGAGAAAATTGTCAAGATCTT
CTTGATGGAAGCTGACTTGAGCGAGGAGGTGCCCCATGATGTTGCCCAGTACATTAAGTTCGAAATGCCG
GTGCTGGACAGTTTTGTTGAAAAATTAAAAGAAGAGGAAGAAAGAGAAATAATCAAACTGACCATGAAGT
TCCAAGCCTTGCGTCTAACAATGCTGCAGCGTCTGGAACAGCTGGTGGAGGCCAAGTAA

Translation (322 aa):
MKEACSSSSHVPVSDSKYILKSELLSLLKTYNCYHEGRSFQLRHREEEGTLIIEGLLNIAWGLRRPIRLQ
MQDDRERVHLPSATWVPERLSYLQKEASPQDSKVPTEEPGTQPANKAEVSGDSSGALEGEEEEVPQLMRT
KSDASCIIQRRSKSRAPSEAQKIRRHRFSINGHFYNHKTSVFTPAYGSVTNVRVNSTMTTQQVLTLLLNK
FRVEDGPSEFALYTVHESGEQTKLKDCEYPLISRILHGPCEKIVKIFLMEADLSEEVPHDVAQYIKFEMP
VLDSFVEKLKEEEEREIIKLTMKFQALRLTMLQRLEQLVEAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH