NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22277.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22277.1 Public Mus musculus 8 Fam149a 23 108 98 CCDS HistoryNCBI Gene:212326Re-query CCDS DB by CCDS ID:22277.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22277.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093526.12 ENSMUSP00000091245.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093526.12Link to Ensembl Protein Viewer:ENSMUSP00000091245.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000093526Re-query CCDS DB by Protein ID:ENSMUSP00000091245
Original member Current member NCBI NM_153535.2 NP_705763.1 Accepted alive Link to Nucleotide Sequence:NM_153535.2Link to Protein Sequence:NP_705763.1Re-query CCDS DB by Nucleotide ID:NM_153535Re-query CCDS DB by Protein ID:NP_705763Link to BLAST:NP_705763.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705763.1 787 Q8CFV2 787 100% 0 0

Chromosomal Locations for CCDS 22277.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 45339299 45339372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45340983 45341061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45341156 45341284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45342391 45342514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45344458 45344661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45344972 45345084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45348442 45348596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45348951 45349141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45350401 45350571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45351663 45351788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45353819 45353961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45355232 45355370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45355622 45355729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 45381153 45381760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2364 nt):
ATGAAGGTCGCTGTGTTGGACCTGGGGTCTCTGTTTGCCAAGATCTTCAAGCTCTCAACAGCATCCCCGG
CAGTCTCCAGCCACCCTGGAGGCGCGGCGGCCACAGGATCAGTAGACTCCGGCGCCAGCACGTCGCTTAG
AGAGGCTGAGACCCTGACTTTGCTCCCATCTCTGCCTCCAGACACCGCGGCCTCACGGGAGCCCTTCACC
CCGGTGCACACTCCGCTCCCTGCCTCGCACCCCAGGAGCTCCGCAGCTGCTCAAAGGGTAGAAGCAACAG
GGTGTTCCGGATCTCTGCCCAGCAGCTCAGGAGCATCCATAGCACCGCCCTTAACCCCCTACAGTGGCTC
TGCCGGCTCAGTGGCTTCAGTGACTTTACCCAGCCCAGGGGTTGACTGGGCGACCCTGCCTTCTGTCACC
ATCCCCTTGGGCAGCAACAGCGTCACAGCATCAAGTCCACGGAACCCTCGCCAGCTGCGAGCTCCTGGAG
AGCGAGAGCCCAGTGTATGGATGGCCCCGGGTCCGGTTCCCAAAACTCTGTTTTTCACCTTGCCTGACAT
TGGCGAGGAATGGACCTCGGACAGCGACTCCCAGGATGACCCAGAAGGAAGGGGGCTCTCGGAAGGACTC
AGGAAGCAGAGCTCTGAAAAGAGCAAAGATCCTTTACCTACGAATTTTACGAGAAACGTGCAGAAAGCCA
TTGATAAATTCGCCAGCGAGTCCCCCTCATCATTTTCATCCAGTGGGAGCCGGACGCCCACAGAGGCCCA
CAACTCATGGCCTGGCTCTTCTACACAGAGCTCTACCACGGGATTGTCTACGGAGCGGAGCTCGGTTTCT
TCTTGGAGAGATGATGAATTTGACAAAGTCAGTGCACAGAAAGTCCACCAGCTGTTTTGGGAGGTTGAGG
AACTGCTATTTGAAGGGAAAGTGAGTCCCCAGACCCAGAATCTCCTGGCTGAATGCAGCGAATGGGCAAG
AAGGTCCCTCCATCTCAGGGTGGTAGGAAGACAGCTCGTCCCACCCACCGATGAAGGCTTCCAACATTTC
CAGGGGAGCCTGCCTAGTTCTGCTACTCACGAAGCTTTACCTCATGTCCCTGACCACACCAGCAGCAGCA
GAGAGCTGTGTATCTCTGGCTCTCAGATAGTCCCTGAGGTACACTCAGCCTCAGCCCTGACAGACCCTGA
TGGCACGGAATCGGCTGACCTCACATCATGCTCATCCCTGAAAGAAGAGGTGTACCATGTGGATGGAAAC
ATTGAAGAATATTTTGCCTTCGACAGAAAGCAGGATGGAGATGAGCATCTTGGACAAAGCCCAGCACTCC
GTGGCAGGAAGAGGCATCGCCATGGGCTTCCTCCCATTTCCCCTGATGACTGCATCAGAGATGCTGTGGC
AGCAGAAGTGTTTGACCACGTGTGGACCAATGTGGTAGAAATCCTGGAAGACCTCATTAGAAAAACCTGG
GAATCTGCACTCACAGGTGGGAAAAAACATAAGGAAAAACTAAAAGTAGCTGAGAACAGATCTCCACACG
TGCTCATGTCCCGTCTCAGCACCGATGTTTGCAGTGTCCCCCCATCCCGAAGCTCTGATACGCTCCAGCC
ATCCTTGGCTCCCCACTTTAACCCACCCCAGTTTCCTCAGCTCCATCGCTTCTCCAGCAACTTCTACAGT
GACTTGAGCGGTGTGATGACGATTCAAGCCAAACCACTCCAGCAGAGACCCACTTATTCTGCAGATAGAA
CACAAAATGACCAAGATGACAAACTGCCTGGAGGAGGGGTCGGAGCATCTTCCCGGCACCGACTTGGCCG
AATTCTAGATGCCCGAGGGCCACAGACTTCAGTCAAGAAGACACCAGTGCACAGGAGACTGCCTTCAATT
GCCTCAGACCCACAGAGGCTGAAAACCCCCACTGTCTACAGTGATGAAATTCTGAGAGGAACCAAACTGC
AAACTGGCATTGACTACCTGCCTTCCCCAGCAGCAGTGCAAACCTCCCGGAGCCGGTTACCCCCAATAGG
CTCTGAGACTGGGGAGCCCAACACGGCAGCCTCAGGGTCCCGCCCTGTTTCTTACAGGGGAAGGCACCCA
CAAAGCCGTGTGTTCAGCGCAATGCCTGACAGCATCGAACGGTCACCCCTTCGAGAAAGGACCATTGTAT
TGGAACAGCTTTCAAGGCCCAGCACAACACACACATTCCGGTCAGACACACCTCGAAAAGGCTCCCTGAC
ACCCGTGGAGTTTGTGGCTCACACTTGGACGGGTCAAAGTATTTTGACAGGTTCACAGTATCTGCCCAAA
TCTTATCAGAGGGCAACCCTGACTGCAAGAAAGAGGTTCCAAGTGGCCTCGTAA

Translation (787 aa):
MKVAVLDLGSLFAKIFKLSTASPAVSSHPGGAAATGSVDSGASTSLREAETLTLLPSLPPDTAASREPFT
PVHTPLPASHPRSSAAAQRVEATGCSGSLPSSSGASIAPPLTPYSGSAGSVASVTLPSPGVDWATLPSVT
IPLGSNSVTASSPRNPRQLRAPGEREPSVWMAPGPVPKTLFFTLPDIGEEWTSDSDSQDDPEGRGLSEGL
RKQSSEKSKDPLPTNFTRNVQKAIDKFASESPSSFSSSGSRTPTEAHNSWPGSSTQSSTTGLSTERSSVS
SWRDDEFDKVSAQKVHQLFWEVEELLFEGKVSPQTQNLLAECSEWARRSLHLRVVGRQLVPPTDEGFQHF
QGSLPSSATHEALPHVPDHTSSSRELCISGSQIVPEVHSASALTDPDGTESADLTSCSSLKEEVYHVDGN
IEEYFAFDRKQDGDEHLGQSPALRGRKRHRHGLPPISPDDCIRDAVAAEVFDHVWTNVVEILEDLIRKTW
ESALTGGKKHKEKLKVAENRSPHVLMSRLSTDVCSVPPSRSSDTLQPSLAPHFNPPQFPQLHRFSSNFYS
DLSGVMTIQAKPLQQRPTYSADRTQNDQDDKLPGGGVGASSRHRLGRILDARGPQTSVKKTPVHRRLPSI
ASDPQRLKTPTVYSDEILRGTKLQTGIDYLPSPAAVQTSRSRLPPIGSETGEPNTAASGSRPVSYRGRHP
QSRVFSAMPDSIERSPLRERTIVLEQLSRPSTTHTFRSDTPRKGSLTPVEFVAHTWTGQSILTGSQYLPK
SYQRATLTARKRFQVAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH