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Report for CCDS20472.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20472.1 Public Mus musculus 6 Lrtm2 23 108 98 CCDS HistoryNCBI Gene:211187Re-query CCDS DB by CCDS ID:20472.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20472.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068351.13 ENSMUSP00000063882.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068351.13Link to Ensembl Protein Viewer:ENSMUSP00000063882.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068351Re-query CCDS DB by Protein ID:ENSMUSP00000063882
Original member Current member EBI ENSMUST00000112756.7 ENSMUSP00000108376.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112756.7Link to Ensembl Protein Viewer:ENSMUSP00000108376.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112756Re-query CCDS DB by Protein ID:ENSMUSP00000108376
Original member Current member EBI ENSMUST00000168793.7 ENSMUSP00000126661.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168793.7Link to Ensembl Protein Viewer:ENSMUSP00000126661.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168793Re-query CCDS DB by Protein ID:ENSMUSP00000126661
Original member NCBI NM_001172207.1 NP_001165678.1 Updated not alive Link to Nucleotide Sequence:NM_001172207.1Link to Protein Sequence:NP_001165678.1Re-query CCDS DB by Nucleotide ID:NM_001172207Re-query CCDS DB by Protein ID:NP_001165678
Current member NCBI NM_001172207.2 NP_001165678.1 Accepted alive Link to Nucleotide Sequence:NM_001172207.2Link to Protein Sequence:NP_001165678.1Re-query CCDS DB by Nucleotide ID:NM_001172207Re-query CCDS DB by Protein ID:NP_001165678Link to BLAST:NP_001165678.1
Original member NCBI NM_172492.3 NP_766080.1 Updated not alive Link to Nucleotide Sequence:NM_172492.3Link to Protein Sequence:NP_766080.1Re-query CCDS DB by Nucleotide ID:NM_172492Re-query CCDS DB by Protein ID:NP_766080
Current member NCBI NM_172492.4 NP_766080.1 Accepted alive Link to Nucleotide Sequence:NM_172492.4Link to Protein Sequence:NP_766080.1Re-query CCDS DB by Nucleotide ID:NM_172492Re-query CCDS DB by Protein ID:NP_766080Link to BLAST:NP_766080.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001165678.1 370 Q8BGX3 370 100% 0 0
NP_766080.1 370 Q8BGX3 370 100% 0 0

Chromosomal Locations for CCDS 20472.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 119317056 119317510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119320421 119321011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119323649 119323715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGTTGGCACCAGGCGGTGGCCCAGAGCAGAGGAGCAAGCTTGTCCTGCAATGGAGGCAGGTCTCCTGGA
TCACCTGCTGGATTGCCCTGTGTGCTGTGGAGGTGATCCCTGCCTGCCCCTTCTCCTGCACATGTGACAG
TCGCAGCTTGGAGGTGGACTGCAGTGGCCTGGGTCTCACCACTGTACCCCCGGATGTGCCCGCGGCCACC
CAAAGCCTTTTGCTCCTGAACAATAAGCTGAGTGCCCTACCAAGCTGGGCATTCGCCAACCTGTCCAACC
TGCAGCGACTGGACCTGTCCAACAACTTTCTTGACCAGCTCCCCCGGTCCATTTTCGAGGACTTGGTCAA
TCTGACAGAGCTCCAGCTTCGGAATAACAGCATCAGGACCCTGGACAGGGACCTGCTCCAGCACTCCCCA
CTACTTAGACATCTGGATTTGTCTATCAACGGCTTGGCCCAGCTGCCCCCGGGGCTTTTTGATGGGCTCC
TGGCTCTGCGCTCCTTGTCCCTCCGCTCCAATCGTCTGCAGAGCCTGGACCGGCTGACGTTCGAGCCCCT
GGCAAGCCTGCAGCTGCTTCAGGTTGGGGACAACCCGTGGGAGTGTGACTGCAACCTTCGGGAATTCAAA
CACTGGCTGGAGTGGTTCTCCTACAGAGGGGGTCGCCTGGATCAGCTTGCCTGTACCCTACCCAAGGAGC
TAAGGGGGAAGGACATGCGTGCGGTCCCCATGGAGATGTTTAACTACTGTTCCCAGCTAGAGGATGAGAA
CAACTCTGCTGGGCTAGATGCTCCAGGACCACCCTGCACCAAGGCCAGCCCGGAGCCTCCTAAACCTAAG
CCTGGGGCTGAGCCTGAGCCCGAACCCAGCACTGCCTGCCCACAGAAGCAGAGGTACCGGCCCGTGAGTG
TGCGGCGAGCCATTGGCACAGTGATCATCGCCGGGGTCGTGTGTGGCATTGTCTGCATCATGATGGTGGT
GGCCGCTGCTTACGGCTGCATCTACGCATCTCTCATGGCCAAGTACCACCGTGAGCTCAAGAAGCGCCAG
CCGCTGATGGGGGACCCTGAGGGTGAGCATGAAGATCAGAAGCAGATCTCGTCTGTGGCATGA

Translation (370 aa):
MLAPGGGPEQRSKLVLQWRQVSWITCWIALCAVEVIPACPFSCTCDSRSLEVDCSGLGLTTVPPDVPAAT
QSLLLLNNKLSALPSWAFANLSNLQRLDLSNNFLDQLPRSIFEDLVNLTELQLRNNSIRTLDRDLLQHSP
LLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQSLDRLTFEPLASLQLLQVGDNPWECDCNLREFK
HWLEWFSYRGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDENNSAGLDAPGPPCTKASPEPPKPK
PGAEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGIVCIMMVVAAAYGCIYASLMAKYHRELKKRQ
PLMGDPEGEHEDQKQISSVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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