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Report for CCDS50126.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50126.1 Public Mus musculus 17 Bicral 23 108 98 CCDS HistoryNCBI Gene:210982Re-query CCDS DB by CCDS ID:50126.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50126.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040624.6 ENSMUSP00000044833.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040624.6Link to Ensembl Protein Viewer:ENSMUSP00000044833.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040624Re-query CCDS DB by Protein ID:ENSMUSP00000044833
Original member Current member EBI ENSMUST00000233537.1 ENSMUSP00000156590.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000233537.1Link to Ensembl Protein Viewer:ENSMUSP00000156590.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000233537Re-query CCDS DB by Protein ID:ENSMUSP00000156590
Original member NCBI NM_001100452.1 NP_001093922.1 Updated not alive Link to Nucleotide Sequence:NM_001100452.1Link to Protein Sequence:NP_001093922.1Re-query CCDS DB by Nucleotide ID:NM_001100452Re-query CCDS DB by Protein ID:NP_001093922
Current member NCBI NM_001100452.2 NP_001093922.1 Accepted alive Link to Nucleotide Sequence:NM_001100452.2Link to Protein Sequence:NP_001093922.1Re-query CCDS DB by Nucleotide ID:NM_001100452Re-query CCDS DB by Protein ID:NP_001093922Link to BLAST:NP_001093922.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093922.1 1074 Q8CHH5 1074 100% 0 0

Chromosomal Locations for CCDS 50126.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 46801048 46801829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46806552 46806654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46807396 46807490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46808349 46808494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46809568 46809626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46811924 46812024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46813933 46814038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46824450 46826123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46829912 46829980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46830065 46830113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 46830951 46830991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3225 nt):
ATGGATGATGACGATGACTCCTGTCTCCTCGATCTTATTGGAGACCCACAAGCATTGAACTATTTTCTGC
ACGGACCTAGCAGTAAATCGGGCAGCGATGATGTGACGAACGCAGGGTATTCTGCAGCCAATTCTAATTC
AATTTTCGCCAACTCCACGAACGCTGACCCTAAATCGGCCCTCAAAGGTGTGAGTGACCAGCTTGGGGAG
GGGCCCAGTGATGGGCTGCCGCTTGCAAGCAGCCTTCAGTTTCTTGAAGATGAACTTGAGTCTTCACCTC
TCCCCGATCTCAGCGAGGACCAACCCTTTGACATTCTTCAGAAATCCTTGCAGGAGGCTAATATCACTGA
ACAGACATTGGCAGAAGAGGCGTACCTGGATGCCAGTATAGGCTCAAGCCAACAGTTTGCACAAGCCCAG
CTTCATCCTTCTTCATCAGCATCCTTTACTCAGGCTTCTAATGTTTCTAATTACTCAGGTCAGACACTGC
AGCCTATCGGGGTGACTCACGTGCCTGTTGGAGCATCGTTTGCAAGCAATACAGTGGGTGTGCAGCATGG
CTTTATGCAACACGTGGGGATCAGTGTTCCCAGCCAGCATTTGCCTAACAGCAGCCAGATTAGTGGCTCC
GGTCAGATACAGTTAATCGGGTCCTTCGGTAATCAGCCTTCCATGATGACTATAAATAACCTCGATGGCT
CTCAAATCATACTGAAAGGCAGTGGGCAGCAAGCCCCATCTAATGTGAGTGGGGGGCTTCTGGTTCACAG
ACAGACTCCTAACGGCAACTCTCTGTTTGGGAACTCCACTTCCAGTCCTGTAGCACAGCCTGTCACCGTT
CCATTTAACAGCACAAATTTCCAGGCATCTTTACCCGTGCATAACATCATTATTCAAAGGGGTCTTGCAC
CAAATTCAAATAAAGTCCCAATTAATATCCAGCCAAAGCCGGTCCAGATGGGTCAGCAGAGCGCGTACAA
TGTGAACAACCTTGGGATCCAGCAGCACCATGCCCAGCAGGGGATCTCCTTCGCCCCCACAAGCTCGCCC
CAGGGCTCCGTGGTTGGGCCGCACATGTCTGTGAACATTGTCAACCAACAGAACACGAGAAAGCCTGTCA
CCTCGCAGGCAGTGAGCGGCACAGGGGGCAGCATCGTCATCCATTCCCCCATGGGCCAGCCTCACACTCC
CCAAAGTCAGTTCCTTATACCCACAAGCCTTTCTGTCAGCTCCAACTCGGTGCACCATGTCCAGGCTATA
AACGGGCAGCTGCTTCAGACTCAGCCCTCCCAGCTCATCTCTGGCCAAGTGGCCTCTGAGCATGTCATGC
TGAACAGGAATTCCTCTAACATGCTCAGGACCAACCAACCATATTCCGGACAGATGCTTAATAACCAGAA
TACCGCCGTCCAGCTGGTGTCTGGGCAGACTTTTGCCACCTCTGGAAGTCCAGTGATAGTCAACCACGCC
TCTCCTCAGATCGTCGGGGGACAGATGCCCTTGCAGCAGGCCTCACCCACCGTGTTACACCTGTCACCTG
GGCAGAGCAGTGTTTCCCAGGGAAGGCCAGGCTTCGCCACCATGCCCGCGGTGAGCGGCATGGCAGGACC
CGCTCGGTTCCCCGCCGTCAGCTCAGCTAGCACTGCTCATCCTACTCTTGGGCCTACGGTGCAGTCGGGG
GCACCGGGATCAAACTTTACGGGAGACCAGCTGACACAAGCCAACAGAACGCCAGCGCCCGTCAGTGTGT
CCCACCGTCTTCCAGTCTCTGCTTCCAAATCCCCCAGCACCTTGAGCAACACCCCGGGGACACAGCAGCA
GTTCTTCTGTCAGGCTCAGAAGAAGTGTTTGAACCAGACCTCCCCCATTCCCACATCCAAGACCACAGAC
GGCTTGAGGCCATCACAGATCCCTGGGCTCTTGAGCACCGCACTGCCAGGACAGGATTCTGGAAGCAAAA
TTATGCCAGCGACCTTGGGGGCCACACAGGCACAACCAGAAAGCTCAGTTGGATCATCCCCGAGCCAGAC
AGCTGTGCAGGTGGATAGTCATCCAGGACAGAAAAGGCCTGCTGCCAAACAGCTGACTAAAGGAGCTTTC
ATCCTCCAGCAGTTACAGAGGGACCAAGCCCATGCTGTGACACCCGACAAAAGCCAGTTCCGGTCACTAA
ATGACACGGTGCAGAGACTGCTCTCCTACCACGTGTGCCAGGGCTCCATGCCCACGGAGGAAGACCTGAG
GCAAGTGGACAATGAATTTGAAGAGGTCGCCACTCAGCTCCTCAAAAGGACCCAAGCTATGCTGAACAAA
TACAGATTCCTGCTCCTAGAAGACGCCATGAGGATCAACCCCTCTGCAGAGATGGTGATGATTGACAGGA
TGTTCAACCAGGAGGAAAGAGCTTCCCTGTCGAGGGACAAGCGTCTGGCGCTCGTAGATCCTGAGGGTTT
TCAGGCCGATTTCTGTTGTTCCTTCAAACTTGACGAAGCTGTACCTGAGACCCCGCTTGACAGGAGTGAC
CAGCATCGCAGCAAAACCAGCTCGCTCCATCAGGTGCCCAGGGCCCAAAGCAGAGACCGAGCCAAGCCAG
GCATGGCAGAAGCAACGAATCATGACCAGTTTCATCTAGTGCCTAACCACATCGTGGTCTCTGCAGAGGG
AAACATTTCTAAAAAGTCAGAAGGCCACAGTAGAACACTGAAATTTGACAGAGGGGTCTTAGGCCAATAC
CGGGGTCCGCCTGAGGACAAGGGCGGCCGGAGGGACCCTGCCAAGGTCAGCAGGTGCTCTCCGGGCCCCG
AGGGCCACCGCAAAAGCTTGCCCAGGCCAGATCACGGCTCTGAGAGCAAGCTCCCCGGCGTCCTGGCCAG
CTCGCACATGGAGATGCCCTGTCTCGACTCCTTCCAGGACAAAGCGCTGAGGAATTCCCCAAAGAATGAG
GTTTTACACACAGACATCATGAAAGGGTCGGGTGAGCCCCAGCCAGATCTCCAGCTCACCAAGAGCCTAG
AGAAAACCTTTAAGAACATCCTGGAACTCAAGAACTCGGGGCGGCCGCCAAGCGACCCTACGGCCAGCGG
TGCGGCGGACCTGGACTTCCCCAGCTTTTCTCCAATGGCTTCGCAGGAAAACTGCCTAGAAAAATTCATC
CCGGACCACAGTGAAGGCGTTGTAGAAACGGACTCCATTTTAGAAGCAGCTGTAAATAGTATTCTAGAGT
GTTAA

Translation (1074 aa):
MDDDDDSCLLDLIGDPQALNYFLHGPSSKSGSDDVTNAGYSAANSNSIFANSTNADPKSALKGVSDQLGE
GPSDGLPLASSLQFLEDELESSPLPDLSEDQPFDILQKSLQEANITEQTLAEEAYLDASIGSSQQFAQAQ
LHPSSSASFTQASNVSNYSGQTLQPIGVTHVPVGASFASNTVGVQHGFMQHVGISVPSQHLPNSSQISGS
GQIQLIGSFGNQPSMMTINNLDGSQIILKGSGQQAPSNVSGGLLVHRQTPNGNSLFGNSTSSPVAQPVTV
PFNSTNFQASLPVHNIIIQRGLAPNSNKVPINIQPKPVQMGQQSAYNVNNLGIQQHHAQQGISFAPTSSP
QGSVVGPHMSVNIVNQQNTRKPVTSQAVSGTGGSIVIHSPMGQPHTPQSQFLIPTSLSVSSNSVHHVQAI
NGQLLQTQPSQLISGQVASEHVMLNRNSSNMLRTNQPYSGQMLNNQNTAVQLVSGQTFATSGSPVIVNHA
SPQIVGGQMPLQQASPTVLHLSPGQSSVSQGRPGFATMPAVSGMAGPARFPAVSSASTAHPTLGPTVQSG
APGSNFTGDQLTQANRTPAPVSVSHRLPVSASKSPSTLSNTPGTQQQFFCQAQKKCLNQTSPIPTSKTTD
GLRPSQIPGLLSTALPGQDSGSKIMPATLGATQAQPESSVGSSPSQTAVQVDSHPGQKRPAAKQLTKGAF
ILQQLQRDQAHAVTPDKSQFRSLNDTVQRLLSYHVCQGSMPTEEDLRQVDNEFEEVATQLLKRTQAMLNK
YRFLLLEDAMRINPSAEMVMIDRMFNQEERASLSRDKRLALVDPEGFQADFCCSFKLDEAVPETPLDRSD
QHRSKTSSLHQVPRAQSRDRAKPGMAEATNHDQFHLVPNHIVVSAEGNISKKSEGHSRTLKFDRGVLGQY
RGPPEDKGGRRDPAKVSRCSPGPEGHRKSLPRPDHGSESKLPGVLASSHMEMPCLDSFQDKALRNSPKNE
VLHTDIMKGSGEPQPDLQLTKSLEKTFKNILELKNSGRPPSDPTASGAADLDFPSFSPMASQENCLEKFI
PDHSEGVVETDSILEAAVNSILEC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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