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Report for CCDS49093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49093.1 Public Mus musculus 12 Ppp1r36 23 108 98 CCDS HistoryNCBI Gene:210762Re-query CCDS DB by CCDS ID:49093.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49093.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000063977.8 ENSMUSP00000069849.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000063977.8Link to Ensembl Protein Viewer:ENSMUSP00000069849.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000063977Re-query CCDS DB by Protein ID:ENSMUSP00000069849
Original member Current member NCBI NM_001163103.1 NP_001156575.1 Accepted alive Link to Nucleotide Sequence:NM_001163103.1Link to Protein Sequence:NP_001156575.1Re-query CCDS DB by Nucleotide ID:NM_001163103Re-query CCDS DB by Protein ID:NP_001156575Link to BLAST:NP_001156575.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001156575.1 411 D3Z0R2 411 100% 0 0

Chromosomal Locations for CCDS 49093.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 76417630 76417716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76418928 76418992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76426749 76426835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76427885 76427982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76428080 76428146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76428835 76428933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76436143 76436277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76437596 76437638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76437956 76438134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76438365 76438553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 76439119 76439305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGTCAAGAGTGAGGCCATGTTCACCGTCCCAGAGTTTTACTCCAGGAGAAAGCAGTTTGTCGGGCAAT
CCTCTACCCGGCTGGACCAATGTGGATTACGACTAGGAATGTGGTATTGGAAAGACGAAACAAAAACTCT
GGAATTTAAAAGTTTCACACCTGCAATAGAACTCAAGGAGAAAGGCAAGAAAGGGAAGGCGGTTCACTTT
GCTGAGATGGACAGCGGAGCTTCGGAAAGGTTGACAGATAAAAGGTTTGCCTCAAGGGATGAGAAGGCGG
CTAAGGCTTTGGAGAAACGAAGTCAGCAGGGCAATGTCACGCTGGATGACGTCAAGTTTGTTGCCCTGCT
GTCCCTCCAGGACACTGAAATGCAGCGGATCTGCTCCTTCACCACGTTTTTGAGGAATAAGAATCTTGAC
AGCTTCCTCATGGCGCTGTTGTACTATCTGTCTTATTACCTGCAGAGACTCTCGATGGAGAAGAATCCCC
AAAGCCGCGTGGTAGGCCTGATAGAGAAGAAAGAGGTAGAGCTGGTTGTGAACAAGTTAGAAGATGCACA
GAAGTACCTGGCTCAGAAGTACTGCATCCTCGTGCTGGGCTTGGGCATGGCGGATAAGCATCACTTGAGC
TGTGGAAAGGAGAAAATATCAGACACCCAAAAAGACTGGAAATTCTTTGAGTCCTTTTATACCTTCTGTA
CCTGTATAGCCTGGATCGTCTTCCGACGTCAGTACTTGACAGAGATCGAGGAAGAGGTAGGCAGGCTTTT
TCGGACCAATATGTTTAACATTCCTCGAAGGAAGCATGAAGACGAAGCGTCAGGAGGAGAGAAGAAGCGC
ATGACATTGGTACAGTTCAGGAGAATGATGGCAAAACGTCCAGCAATTAAAAAGGCCGTGGACATGCGCT
CCCCAGTTTTGTCTACGCTGCTGCCGTCTCTCAGAGAAAAAGCTCAACATATCACAGAGAAAAAGTATGT
GGCAGGCATCAAACTCCAACCCCGAGAGGAGAACATAATAACAGATCTGGAATCTGTGGCTATGCCAATA
GTTGGCATCTTGGGGGAGCCTCGAAATCTGTTCAACCCGAATACTCTCCTCCCCCTGGAATTAGAAGAAA
ACACAAAACCAAGTGGAAGAAGTTCTTCCATAGTCGAGACAAATAACACAAAGATCCAAAACACACTGAG
TTTAGTCATGTCAAAACTAGCTTCGCCAAGCACCTGCCCTAAATAA

Translation (411 aa):
MVKSEAMFTVPEFYSRRKQFVGQSSTRLDQCGLRLGMWYWKDETKTLEFKSFTPAIELKEKGKKGKAVHF
AEMDSGASERLTDKRFASRDEKAAKALEKRSQQGNVTLDDVKFVALLSLQDTEMQRICSFTTFLRNKNLD
SFLMALLYYLSYYLQRLSMEKNPQSRVVGLIEKKEVELVVNKLEDAQKYLAQKYCILVLGLGMADKHHLS
CGKEKISDTQKDWKFFESFYTFCTCIAWIVFRRQYLTEIEEEVGRLFRTNMFNIPRRKHEDEASGGEKKR
MTLVQFRRMMAKRPAIKKAVDMRSPVLSTLLPSLREKAQHITEKKYVAGIKLQPREENIITDLESVAMPI
VGILGEPRNLFNPNTLLPLELEENTKPSGRSSSIVETNNTKIQNTLSLVMSKLASPSTCPK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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