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Report for CCDS48777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48777.1 Public Mus musculus 11 Timd5 23 108 98 CCDS HistoryNCBI Gene:210535Re-query CCDS DB by CCDS ID:48777.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109228.1 ENSMUSP00000104851.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109228.1Link to Ensembl Protein Viewer:ENSMUSP00000104851.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109228Re-query CCDS DB by Protein ID:ENSMUSP00000104851
Original member Current member NCBI NM_001163357.1 NP_001156829.1 Accepted alive Link to Nucleotide Sequence:NM_001163357.1Link to Protein Sequence:NP_001156829.1Re-query CCDS DB by Nucleotide ID:NM_001163357Re-query CCDS DB by Protein ID:NP_001156829Link to BLAST:NP_001156829.1

Chromosomal Locations for CCDS 48777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 46526257 46526305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46528408 46528746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46533131 46533180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46535506 46535614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46536409 46536442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 46537834 46538005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (753 nt):
ATGATGTCCCATCAAGTCCTCATTTCAGGCCTCCTACTCCTCCTCCCAGCTGCTGTGCATGCTTTCCCAG
AAGTTCATGGAGTGGTGGGTCAGCCTGTCACACTTCCATGTACCTATCCGGTGTCTAATGGCTTAGCATC
CATGTGCTGGGGCCGAGGTGAATGCACATCTGATACATGTGGACAAACACTGGTCTGGACTGATGGAAAC
CGAGTCAACTATCAGACAAGCAACCGCTACCAGATAAACTCGCAGCTTCTTCAAGGAAATGCGTCCTTGA
CAATCGAGGACGCCTATGAGAGCGACAGTGGTCTCTACTGCTGTCGAGTGGAAATGAAGGGATGGGATGG
CGTGCAGACACTGACCACCTCACTGCAGGTTCAACCAGTTTGGATTGCGACTGTGACGTCTTCAAACCAC
CCTTGGAATAATAATACTGAAGTGGTTCCTACAGAAACTCCCCTGAAGATCCCCATTAGAGGCCTCTTCA
TTGGAATCTCTGTGTCTGCCTCACTGCTGATCCTTGCGAGCATCCCAACCATCATACGGTGCAGACACAG
AGAAAAGAAGAGTCCAGAAGGCAACTCTGAGTGCAGCTCAGTTTTCTTCCATGCTTATCAGAATGGCGCC
TTTCAAAGTATAGTGCAACTTCAAGCCGAAGATATAATCTACGTTATTGAAGACAATTTTCATCCAAGGA
TTAAATCCCAGTTGCCCTTTGAGATGACAACATTCCAAAGCTGCAGGAAGTAA

Translation (250 aa):
MMSHQVLISGLLLLLPAAVHAFPEVHGVVGQPVTLPCTYPVSNGLASMCWGRGECTSDTCGQTLVWTDGN
RVNYQTSNRYQINSQLLQGNASLTIEDAYESDSGLYCCRVEMKGWDGVQTLTTSLQVQPVWIATVTSSNH
PWNNNTEVVPTETPLKIPIRGLFIGISVSASLLILASIPTIIRCRHREKKSPEGNSECSSVFFHAYQNGA
FQSIVQLQAEDIIYVIEDNFHPRIKSQLPFEMTTFQSCRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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