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Report for CCDS39831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39831.1 Public Mus musculus 7 Irgc 23 108 98 CCDS HistoryNCBI Gene:210145Re-query CCDS DB by CCDS ID:39831.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39831.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080594.7 ENSMUSP00000104072.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080594.7Link to Ensembl Protein Viewer:ENSMUSP00000104072.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000080594Re-query CCDS DB by Protein ID:ENSMUSP00000104072
Original member Current member EBI ENSMUST00000205776.1 ENSMUSP00000145975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205776.1Link to Ensembl Protein Viewer:ENSMUSP00000145975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205776Re-query CCDS DB by Protein ID:ENSMUSP00000145975
Original member Current member NCBI NM_001358033.1 NP_001344962.1 Accepted alive Link to Nucleotide Sequence:NM_001358033.1Link to Protein Sequence:NP_001344962.1Re-query CCDS DB by Nucleotide ID:NM_001358033Re-query CCDS DB by Protein ID:NP_001344962Link to BLAST:NP_001344962.1
Original member Current member NCBI NM_001358034.1 NP_001344963.1 Accepted alive Link to Nucleotide Sequence:NM_001358034.1Link to Protein Sequence:NP_001344963.1Re-query CCDS DB by Nucleotide ID:NM_001358034Re-query CCDS DB by Protein ID:NP_001344963Link to BLAST:NP_001344963.1
Original member Current member NCBI NM_199013.2 NP_950178.2 Accepted alive Link to Nucleotide Sequence:NM_199013.2Link to Protein Sequence:NP_950178.2Re-query CCDS DB by Nucleotide ID:NM_199013Re-query CCDS DB by Protein ID:NP_950178Link to BLAST:NP_950178.2

Chromosomal Locations for CCDS 39831.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 24431999 24433390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1392 nt):
ATGGCAACTTCCAGGTTGCCCGCCGTGCCTGAGGAGACCACCATCCTCATGGCCAAGGAAGAGCTGGAGG
CCCTGCGCACTGCTTTTGAGTCTGGCGACATCCCTCAAGCCGCCTCTCGCCTTCGGGAGCTGCTGGCCAA
CTCAGAGACCACCCGGCTGGAAGTGGGCGTCACGGGTGAGTCGGGAGCCGGCAAGTCCTCCCTCATCAAT
GCCCTACGCGGCCTGGGGGCCGAGGATCCTGGCGCAGCTCTCACTGGGGTCGTGGAGACCACCATGCAGC
CTTCGCCCTACCCGCACCCGCAGTTTCCCGACGTGACCCTGTGGGACCTGCCGGGGGCCGGTTCTCCAGG
CTGCTCAGCAGACAAGTATCTGAAGCAGGTGGATTTCGGCCGCTATGACTTCTTCTTGCTCGTCTCCCCC
CGTCGCTGTGGCGCCGTGGAGTCCCGCCTCGCTTCTGAGATCCTGCGCCAGGGGAAGAAGTTTTACTTTG
TGCGCACCAAGGTGGACGAGGATCTGGCGGCCACCCGCAGCCAGAGGCCCTCGGGTTTCAGCGAGGCTGC
AGTCCTCCAGGAGATCCGAGATCACTGCACGGAGCGGCTGCGGGTAGCGGGTGTGAATGATCCCCGCATC
TTCCTGGTGTCCAACCTGTCGCCAACCCGCTATGACTTCCCGATGCTCGTGACCACCTGGGAGCACGACC
TGCCCGCCCACCGTCGCCACGCCGGTCTGCTGTCCCTGCCTGACATCTCGCTGGAGGCTCTGCAGAAGAA
GAAGGACATGCTACAAGAGCAGGTGCTTAAGACTGCCTTGGTATCTGGTGTCATCCAGGCCCTGCCGGTC
CCCGGACTGGCAGCCGCCTACGACGACGCCTTGCTTATCCGCTCACTGCGGGGCTACCACCGCAGCTTCG
GCCTAGACGACGACTCGCTGGCCAAGCTGGCCGAGCAGGTGGGCAAACAGGCAGGGGACCTGCGCTCCGT
CATCCGCTCCCCCCTGGCCAACGAGGTCTCACCAGAGACTGTCCTGAGACTCTACTCGCAGTCCTCAGAT
GGTGCCATGCGGGTGGCCCGTGCCTTTGAGAGGGGCATCCCTGTTTTCGGCACGCTGGTGGCCGGGGGTA
TCAGCTTCGGCACGGTCTACACCATGCTCCAGGGCTGTCTCAATGAGATGGCTGAGGACGCCCAACGCGT
CCGCATCAAAGCCCTGGAGGAAGATGAGCCCCAGGGGGGTGAGGTGAGCTTGGAGGCGGCTGGTGACAAT
TTAGTGGAAAAGCGGAGCACTGGGGAAGGAACCAGCGAGGAAGCCCCGCTGTCCACCCGCAGGAAGCTCG
GCCTCCTCCTCAAGTATATTCTTGACAGCTGGAAGAGGCGCGACTTGTCAGAAGACAAATAA

Translation (463 aa):
MATSRLPAVPEETTILMAKEELEALRTAFESGDIPQAASRLRELLANSETTRLEVGVTGESGAGKSSLIN
ALRGLGAEDPGAALTGVVETTMQPSPYPHPQFPDVTLWDLPGAGSPGCSADKYLKQVDFGRYDFFLLVSP
RRCGAVESRLASEILRQGKKFYFVRTKVDEDLAATRSQRPSGFSEAAVLQEIRDHCTERLRVAGVNDPRI
FLVSNLSPTRYDFPMLVTTWEHDLPAHRRHAGLLSLPDISLEALQKKKDMLQEQVLKTALVSGVIQALPV
PGLAAAYDDALLIRSLRGYHRSFGLDDDSLAKLAEQVGKQAGDLRSVIRSPLANEVSPETVLRLYSQSSD
GAMRVARAFERGIPVFGTLVAGGISFGTVYTMLQGCLNEMAEDAQRVRIKALEEDEPQGGEVSLEAAGDN
LVEKRSTGEGTSEEAPLSTRRKLGLLLKYILDSWKRRDLSEDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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